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Overview of BioCreative II gene normalization..
Genome Biology, vol 9, no. Supplement 2, pp. S3, Epub 2008 Sep 1 2008.
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Functional genomics of osteoarthritis: on the way to evaluate disease hypotheses.
Clin Orthop Relat Res, no. 427 Suppl, pp. 138-143, 2004.
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The promise and limitations of DNA microarray analysis: comment on the editorial by Firestein and Pisetsky.
Arthritis Rheum, vol 48, no. 3, pp. 860; author reply 862, 2003.
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Functional genomics of osteoarthritis.
Pharmacogenomics, vol 3, no. 5, pp. 635-50, 2002.
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Gene expression in chondrocytes assessed with use of microarrays.
Joint Surg Am, vol 85-A, no. Suppl 2, pp. 117-123, 2003.
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cDNA arrays in degenerative arthritis research.
Future Rheumatology, vol 11, pp. 101-109, 2006.
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Gene expression profiling of serum- and interleukin-1beta-stimulated primary human adult articular chondrocytes--a molecular analysis based on chondrocytes isolated from one donor.
Cytokine, vol 31, no. 3, pp. 227-240, 2005.
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Large-Scale Gene Expression Profiling of Osteoarthritic Cartilage Degeneration.
Arthritis&Rheumatism, vol 54, no. 11, pp. 3533-3544, 2006.
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Analysis of Differential Gene Expression in Healthy and Osteoarthritic Cartilage and Isolated Chondrocytes by Microarray Analysis.
Methods in Molecular Medicine , vol 100, pp. 109-128, 2005.
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Functional genomics, evo-devo and systems biology: a chance to overcome complexity?.
Curr Opin Rheumatol, vol 19, no. 5, pp. 463-470, 2007.
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Protein structure prediction by threading with experimental constraints.
Ninth International Conference on Intelligent Systems for Molecular Biology (ISMB 2001), vol Poster, 2001.
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An Automatic Layout Algorithm for BPEL Processes.
SoftVis '10: Proceedings of the 5th ACM Symposium on Software visualization, New York, NY, USA, ACM, October 2010.
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Fast computation of minimum hybridization networks.
Bioinformatics, vol 28, no. 2, pp. 191-197, 2011.
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Improving fold recognition of protein threading by experimental distance constraints.
, , (eds.):
German Conference on Bioinformatics (GCB 2001), Braunschweig, Germany, October 7-10, 2001, pp. 68-77, 2001.
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Visualization of Complex BPEL Models.
Proc. of the 17th International Symposium on Graph Drawing (GD '09), LNCS, 2010.
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Space Efficient Modifications to Structator - a Fast Index-Based Search Tool for RNA Sequence-Structure Patterns.
(ed.):
Proceedings of the 11th International Symposium on Experimental Algorithms (SEA 2012), Bordeaux, France, June 7-9, 2012, Lecture Notes in Computer Science, vol 7276, pp. 27-38, Springer Verlag, 2012.
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Improving fold recognition of protein threading by experimental distance constraints.
In Silico Biol, vol 2, no. 3, pp. 325-337, 2002.
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Analysis of Expression Data of Tissue Mixtures.
Bachelor Thesis, LFE Bioinformatik, LMU München, October 2011.
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Model Based Data Viewing and Analysis.
Bachelor Thesis, LFE Bioinformatik, LMU München, September 2011.
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Automatic Determination of Reaction Mappings and Reaction Center Information. 2. Validation on a Biochemical Reaction Database.
J. Chem. Inf. Model., vol 48, no. 6, pp. 1190–1198, 2008.
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Predicting activated conformations of substrates in enzyme binding sites.
15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 6th European Conference on Computational Biology (ECCB), 2007.
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Embedded subgraph isomorphism and its applications in cheminformatics and metabolomics.
1st German Conference in Chemoinformatics, 2005.
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Biological context and the analysis of gene expression data.
(ed.):
ECCB 2002, vol Poster, 2002.
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Using simple learning machines to derive a new potential for molecular modelling, in Rational Approaches to Drug Design.
Proc. of 13th Eur. Symp. on QSAR, Prous Science, pp. 125-134, 2001.
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Prediction of gene functions from biological interactions.
(ed.):
RECOMB 2002, vol Poster, 2002.
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New Development in Extracting Tail Recursive Programs from Proofs.
Pre-Proceedings of the 19th International Symposium on Logic-Based Program Synthesis and Transformation (LOPSTR'09), Coimbra, Portugal, September 9-11, 2009, 2009.
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Vergleich und Visualisierung von Algorithmen zur Konstruktion von Suffix-Arrays anhand sehr langer Texte.
Bachelor Thesis, LFE Bioinformatik, LMU München, May 2006.
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Quality Check and Differential Expression Using Newly Synthesized RNA.
Bachelor Thesis, LFE Bioinformatik, LMU München, September 2010.
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RELEXplain - Relation Networks Explaining Biological Processes.
Master Thesis, LFE Bioinformatik / LMU München, 2012.
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Protonation State and Enzyme Substrate Interaction.
Diploma Thesis, LFE Praktische Informatik und Bioinformatik / LMU München, August 2008.
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Analysis of Virus Host Interaction Networks.
Bachelor Thesis, LFE Bioinformatik, LMU München, September 2011.
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Probabilistic methods for predicting protein functions in protein-protein interaction networks.
, (eds.):
German Conference on Bioinformatics, GCB 2004, Bielefeld, Germany, October 4-6, 2004, Lecture Notes in Informatics, vol P-53, pp. 159-168, Gesellschaft für Informatik, 2004.
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QUASAR–scoring and ranking of sequence-structure alignments.
Bioinformatics, vol 21, no. 24, pp. 4425–4426, Dec 2005.
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Alternative Splicing and Proteome Complexity in Mass Spectrometry.
PLoS Computational Biology, Submitted.
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Algorithmische Systembiologie mit Petrinetzen – Von qualitativen zu quantitativen Systemmodellen.
Informatik-Spektrum, vol 32, no. 4, pp. 310-319, 2009.
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Alternative Splicing and Protein Structure Evolution.
PhD Thesis, LMU München, January 2009.
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Vorolign - Fast Structural Alignment using Voronoi Contacts.
Bioinformatics, vol 23, no. 2, pp. e205-e211, 2007.
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Alternative splicing and protein structure evolution.
Nucleic Acids Res., vol 36, pp. 550–558, Feb 2008.
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ProSAS: a database for analyzing alternative splicing in the context of protein structures.
Nucleic Acids Res., vol 36, pp. D63–68, Jan 2008.
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AutoPSI: a database for automatic structural classification of protein sequences and structures.
Nucleic Acids Res., vol 36, pp. 398–401, Jan 2008.
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Flavonoids Affect Actin Functions in Cytoplasm and Nucleus.
Biophysical Journal, vol 93, no. 8, pp. 2767-2780, 2007.
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A context-based approach to identify the most likely mapping for RNA-seq experiments.
BMC Bioinformatics, vol 13(Suppl 6), pp. S9, 2012.
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An efficient sampling scheme for comparison of large graphs.
Mining and Learning with Graphs, no. 1, Electronic Proceedings, 2007.
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Strukturelle Analyse von alternativem Splicing.
Diploma Thesis, LFE Praktische Informatik und Bioinformatik / LMU München, August 2008.
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Optimization of 3D Protein Structure Models.
Bachelor Thesis, LFE Bioinformatik, LMU München, December 2009.
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Program Development by Proof Transformation: Recent Evolutions.
15th International Conferences on Logic for Programming, Artificial Intelligence and Reasoning (LPAR'08), Doha, Qatar, November 22-27, 2008, Short Talk, 2008.
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Automatic Synthesis of an Efficient Algorithm for the Similarity of Strings Problem.
, (eds.):
Proceedings of the 4th Workshop on Automated Formal Methods (AFM'09), Grenoble, France, June 27, 2009, pp. 23-30, 2009.
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Program Development by Proof Transformation.
PhD Thesis, LMU München, December 2009.
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Extraction of Efficient Programs from Proofs: The Case of Structural Induction over Natural Numbers.
, , (eds.):
Local Proceedings of the Fourth Conference on Computability in Europe: Logic and Theory of Algorithms (CiE'08), Athens, Greece, June 15-20, 2008, pp. 64-76, 2008.
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The Helmholtz Network for Bioinformatics: an integrative web portal forbioinformatics resources.
Bioinformatics, vol 20, no. 2, pp. 268-70, 2004.
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Protein structure alignment considering phenotypic plasticity.
Bioinformatics, vol 24, pp. 98–104, Aug 2008.
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Vorescore - fold recognition improved by rescoring of protein structure models.
Bioinformatics, vol 26, no. 18, pp. i482-i488, September 2010.
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Phenotypic Plasticity as a Measure for Protein Structural Similarity.
Master Thesis, LFE Praktische Informatik und Bioinformatik / LMU München, November 2007.
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Analysis of Protein Sequence-Structure Alignments.
Bachelor Thesis, LMU München, December 2006.
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Systematic Comparison of SCOP and CATH: A new Gold Standard for Protein Structure Analysis.
BMC Structural Biology, vol 9, no. 23, 2009.
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Reliable gene signatures for microarray classification: assessment of stability and performance.
Bioinformatics, vol 22, no. 19, pp. 2356-2363, 2006.
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Feature Selection Methods in Bioinformatics.
Bachelor Thesis, LFE Praktische Informatik und Bioinformatik / LMU München, June 2006.
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Systemic Analysis of Viral and Cellular miRNA Targets in Cells Latently Infected with Human gamma-Herpesviruses through RISC Immunoprecipitation Assays.
Cell Host & Microbe, vol 7, no. 4, pp. 324-334, April 2010.
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High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay.
RNA, vol 14, no. 9, pp. 1959–1972, Sep 2008.
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Erkennung von Gennamen in wissenschaftlichen Texten - automatische Generierung von Synonymlisten und Präprozessierung der Texte.
Bachelor Thesis, LMU München, June 2003.
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Optimization of Sequence-Structure Alignments using the Vorolign-Scoring Function.
Bachelor Thesis, LFE Praktische Informatik und Bioinformatik / LMU München, November 2007.
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Classification of ncRNAs using position and size information in deep sequencing data.
Bioinformatics, vol 26, no. 18, pp. i426-i432, September 2010.
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FERN - a Java framework for stochastic simulation and evaluation of reaction networks.
BMC Bioinformatics, vol 9, no. 1, pp. 356, 2008.
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RIP-chip enrichment analysis.
Bioinformatics, vol 29, no. 1, pp. 77--83, September 2012, Basel, Switzerland, Jan 2013.
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FERN - Stochastic Simulation and Evaluation of Reaction Networks.
(ed.):
Systems Biology for Signaling Networks, Systems Biology, vol 1, Part 4, pp. 751-775, Springer, 2010.
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Detecting outlier peptides in quantitative high-throughput mass spectrometry data.
Detecting outlier peptides in quantitative high-throughput mass spectrometry data, September 2011, Weihenstephan, Germany, 2011.
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Petri Net Based System for Spatio-Temporal Simulation of Gene Regulation.
Diploma Thesis, LFE Bioinformatik/LMU München, July 2008.
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Detecting outlier peptides in quantitative high-throughput mass spectrometry data.
Journal of Proteomics, vol 75, no. 11, pp. 3230-9, 2012 Jun 18 2012.
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PRIME: a graphical interface for integrating genomic/proteomic databases.
Proteomics, vol 5, no. 1, pp. 76-80, 2005.
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Metabolism of halophilic archaea.
Extremophiles, vol 12, no. 2, pp. 177-196, 2008.
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Activation of interleukin-1 signaling cascades in normal and osteoarthritic articular cartilage.
Am J Pathol, vol 171, no. 3, pp. 938-946, 2007.
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Suffix Arrays on Words.
, (eds.):
Proceedings of the 18th Annual Symposium on Combinatorial Pattern Matching (CPM'07), London, Ontario, July 9-11, 2007, Lecture Notes in Computer Science, vol 4580, pp. 328-339, Springer-Verlag, 2007.
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Evaluation of a fast implicit solvent model for molecular dynamics simulations.
Proteins: Structure, Function, and Bioinformatics, vol 46, no. 1, pp. 24-33, 2002.
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Range Median of Minima Queries, Super-Cartesian Trees, and Text Indexing.
, (eds.):
Proceedings of the International Workshop on Combinatorial Algorithms (IWOCA'08), September 13-15, 2008, Nagoya, Japan, Texts in Algorithmics, vol 12, pp. 239-252, College Publications, January 2010.
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Fast Frequent String Mining Using Suffix Arrays.
Proceedings of the 5th IEEE International Conference on Data Mining (ICDM'05), Houston, TX, USA, November 27-30, 2005, pp. 609-612, IEEE Computer Society, 2005.
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Space-Efficient Preprocessing Schemes for Range Minimum Queries on Static Arrays.
SIAM Journal on Computing, vol 40, no. 2, pp. 465-492, 2011.
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Data Structures for Efficient String Algorithms.
PhD Thesis, LMU München, October 2007.
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Strain-specific genes of Helicobacter pylori: Genome evolution driven by a novel type IV secretion system and genomic island transfer.
Nucleic Acids Research, vol 38, no. 18, pp. 6089-101, Epub May 2010 2010.
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Range Median of Minima Queries, Super-Cartesian Trees, and Text Indexing.
, (eds.):
Local Proceedings of the 19th International Workshop on Combinatorial Algorithms (IWOCA'08), Nagoya, Japan, September 13-15, 2008, pp. 239-252, 2008.
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Finding Range Minima in the Middle: Approximations and Applications.
Mathematics in Computer Science, vol 3, no. 1, pp. 17-30, March 2010.
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Optimal String Mining Under Frequency Constraints.
, , (eds.):
Proceedings of the 10th European Conference on Principles and Practice of Knowledge Discovery in Databases (PKDD'06), Berlin, Germany, September 18-22, 2006, Lecture Notes in Computer Science, vol 4213, pp. 139-150, Springer-Verlag, 2006.
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Theoretical and Practical Improvements on the RMQ-Problem with Applications to LCA and LCE.
, (eds.):
Proceedings of the 16th Annual Symposium on Combinatorial Pattern Matching (CPM'06), Barcelona, Spain, July 5-7, 2006, Lecture Notes in Computer Science, vol 4009, pp. 36-48, Springer-Verlag, 2006.
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Practical Entropy-Bounded Schemes for O(1)-Range Minimum Queries.
, (eds.):
Proceedings of the 2008 Data Compression Conference (DCC'08), Snowbird, Utah, U.S.A., March 25-27, 2008, pp. 272-281, IEEE Computer Society, 2008.
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Fast Frequent String Mining Using Suffix Arrays.
Technical Report, no. TUM-I0512, Institut für Informatik der Technischen Universität München, November 2005.
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A New Succinct Representation of RMQ-Information and Improvements in the Enhanced Suffix Array.
, , (eds.):
Proceedings of the International Symposium on Combinatorics, Algorithms, Probabilistic and Experimental Methodologies (ESCAPE'07), Hangzhou, China, April 7-9, 2007, Lecture Notes in Computer Science, vol 4614, pp. 459-470, Springer-Verlag, 2007.
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A 2-Approximation Algorithm for Sorting by Prefix Reversals.
, (eds.):
Proceedings of the 13th Annual European Symposium on Algorithms (ESA'05), Mallorca, Spain, October 3-6, 2005, Lecture Notes in Computer Science, vol 3669, pp. 415-425,, Springer-Verlag, 2005.
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Evolutionarily conserved herpesviral protein interaction networks..
PLoS Pathog, vol 5, no. 9, pp. e1000570, Sep 2009.
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A hypergraph-based method for unification of existing protein structure-and sequence-families.
In Silico Biol, vol 2, no. 3, pp. 339-349, 2002.
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Virus-host interactomes and global models of virus-infected cells.
Trends in Microbiology , vol 19, no. 10, pp. 501-8, 2011.
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Support vector machines for separation of mixed plant-pathogen EST collections based on codon usage.
Bioinfomatics, vol 21, no. 8, pp. 1383-1388, 2005.
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Conserved principles of mammalian transcriptional regulation revealed by RNA half-life.
Nucleic Acids Research, vol 37, no. 17, pp. e115, Sep 2009.
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Metabolic tagging and purification of nascent RNA: Implications for transcriptomics.
Molecular BioSystems, vol 5, no. 11, pp. 1271-8, Nov 2009.
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Automatische Generierung und Verbesserung von Synonymlisten und Entwicklung eines geeigneten Benchmarksystems.
Bachelor Thesis, LMU München, June 2003.
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Analysis of High-throughput Data - Protein-Protein Interactions, Protein Complexes and RNA Half-life.
Ausgezeichnete Informatikdissertationen 2009, GI-Edition Lecture Notes in Informatics, 2010.
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Toward the complete interactome.
Nat Biotechnol, vol 24, no. 6, pp. 614-615, Jun 2006.
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Identifying the topology of protein complexes from affinity purification assays.
Proceedings of the German Conference on Bioinformatics (GCB 2008), September 9-12, 2008, Dresden, Germany, Lecture Notes in Informatics, vol P-136, pp. 30-43, GI, 2008.
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Influence of degree correlations on network structure and stability in protein-protein interaction networks.
BMC Bioinformatics, vol 8, pp. 297, 2007.
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On Abstaining Classifiers.
Master Thesis, TU München, 2005.
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Identifying the topology of protein complexes from affinity purification assays.
Bioinformatics, vol 25, no. 16, pp. 2140-2146, August 2009.
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Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast.
Journal of Computational Biology, vol 16, no. 8, pp. 1-17, 2009.
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Inferring topology from clustering coefficients in protein-protein interaction networks.
BMC Bioinformatics, vol 7, pp. 519, Nov 2006.
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Bootstrapping the Interactome: Unsupervised Identification of Protein Complexes in Yeast.
, , (eds.):
Proceedings of the 12th Annual International Conference on Research in Computational Molecular Biology, RECOMB 2008, Singapore, March 30 - April 2, 2008, Lecture Notes in Computer Science, vol 4955, pp. 3-16, Springer, 2008.
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Analysis of High-Throughput Data - Protein-Protein Interactions, Protein Complexes and RNA Half-life.
PhD Thesis, LMU München, February 2009.
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HALO - A Java framework for precise transcript half-life determination.
Bioinformatics, vol 26, no. 9, pp. 1264-1266, May 2010.
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Gene and protein nomenclature in public databases.
BMC Bioinformatics, vol 7, pp. 372, 2006.
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Data Processing Effects on the Interpretation of Microarray Gene Expression Experiments.
, , (eds.):
German Conference on Bioinformatics (GCB) 2005, GI Lecture Notes in Informatics, vol P-71, pp. 77-91, GI, 2005.
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Normalization strategies for mRNA expression data in cartilage research.
Osteoarthritis Cartilage, vol 16, pp. 947-955, 2008.
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Human Gene Normalization by an Integrated Approach including Abbreviation Resolution and Disambiguation.
Second BioCreative Challenge Evaluation Workshop, 2007.
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Text Mining and Gene Expression Analysis - Towards Combined Interpretation of High Throughput Data.
PhD Thesis, LMU München, September 2007.
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ProMiner: rule-based protein and gene entity recognition.
BMC Bioinformatics, vol 6, no. (Suppl.1), pp. S14, May 2005.
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A simple approach for protein name identification: prospects and limits.
BMC Bioinformatics, vol 6, no. (Suppl.1), pp. S15, May 2005.
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Normalization and gene p-value estimation: issues in microarray data processing.
Bioinform Biol Insights, vol 2, pp. 291-305, 2008.
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RelEx - Relation extraction using dependency parse trees.
Bioinformatics, vol 23, no. 3, pp. 365-371, 2007.
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Exact versus approximate string matching for protein name identification.
BioCreative Challenge Evaluation Workshop, 2004.
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Comparison of the chondrosarcoma cell line SW1353 with primary human adult articular chondrocytes with regard to their gene expression profile and reactivity to IL-1beta.
Osteoarthritis Cartilage, vol 13, no. 8, pp. 697-708, 2005.
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Gene Graph Enrichment Analysis (GGEA): Mapping of Gene Expression Data onto Networks of Biochemical Processes.
Diploma Thesis, LFE Bioinformatik, LMU München, September 2010.
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From Sets to Graphs: Towards a Realistic Enrichment Analysis of Transcriptomic Systems.
Bioinformatics, Bioinformatics, vol 27, no. 13, pp. i366-i373, 2011.
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Ein programmierbarer Web Service zur Charakterisierung biologischer Objekte.
Bachelor Thesis, LMU München, February 2005.
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Identification and Correction of Errors in NMR-Chemical Shift Data.
Master Thesis, LFE Bioinformatik, LMU München, June 2006.
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AutoSCOP: automated prediction of SCOP classifications using unique pattern-class mappings.
Bioinformatics, vol 23, no. 10, pp. 1203-1210, 2007.
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The Binding Matrix - A Statistical Learning Approach to Protein-DNA Binding Site Prediction.
Diploma Thesis, University of Lübeck, 2003.
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New Methods for the Prediction and Classification of Protein Domains.
PhD Thesis, Ludwig-Maximilians-Universität München, October 2007.
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Combining Secondary Structure Element Alignment and Profile Alignment for Fold Recognition.
, (eds.):
German Conference on Bioinformatics, GCB 2004, Bielefeld, Germany, October 4-6, 2004, Lecture Notes in Informatics, vol P-53, pp. 141-148, Gesellschaft für Informatik, 2004.
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On the Correspondence between Scoring Matrices and Binding Site Sequence Distributions.
ISMB 2003, pp. Poster, Brisbane, 2003.
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SSEP-Domain: protein domain prediction by alignment of secondary structure elements and profiles.
Bioinformatics, vol 22, no. 2, pp. 181-187, 2006.
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BioWeka--extending the Weka framework for bioinformatics.
Bioinformatics, vol 23, no. 5, pp. 651-653, 2007.
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Genetics meets metabolomics: a genome-wide association study of metabolite profiles in human serum.
PLoS Genet., vol 4, no. 11, pp. e1000282, November 2008.
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SimShift: Identifying Structural Similarities from NMR Chemical Shifts.
European Conference on Computational Biology (ECCB05) , Poster, 2005.
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Bioinformatics Methods for NMR Chemical Shift Data.
PhD Thesis, LMU München, February 2008.
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SimShift: Identifying structural similarities from NMR chemical shifts.
Bioinformatics, vol 22, no. 4, pp. 460-465, 2006.
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CheckShift: Automatic Correction of Inconsistent Chemical Shift Referencing.
Journal of Biomolecular NMR, vol 39, no. 3, pp. 223-227, September 2007.
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CheckShift Improved: Fast Chemical Shift Reference Correction with High Accuracy.
Journal of Biomolecular NMR, vol 44, no. 4, pp. 207-211, August 2009.
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SimShiftDB: Chemical-Shift-Based Homology Modeling.
, (eds.):
Proceedings of the First International Conference on Bioinformatics Research and Development (BIRD'07), Berlin, Germany, March 12-14, Lecture Notes in Bioinformatics, vol 4414, pp. 357-370, Springer, 2007.
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SimShiftDB; local conformational restraints derived from chemical shift similarity searches on a large synthetic database.
Journal of Biomolecular NMR, vol 43, no. 3, pp. 179-185, March 2009.
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SimShiftDB: Chemical-Shift-Based Homology Modeling.
15th Annual International Conference on Intelligent Systems for Molecular Biology (ISMB) and 6th European Conference on Computational Biology (ECCB), Vienna, Austria., PLoS Track Talk and Poster, 2007.
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Network Oriented Transfer of Experimental Data Between Organisms.
Diploma Thesis, LFE Bioinformatik, LMU München, September 2010.
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Reconstruction, modeling & analysis of Halobacterium salinarum R-1metabolism.
Mol Biosyst, vol 4, no. 2, pp. 148-59, 2008.
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Contextual analysis of RNAi-based functional screens using interaction networks.
Bioinformatics, vol 27, pp. 2707-2713, November 2011.
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Assigning functional linkages to proteins using phylogenetic profiles and continuous phenotypes.
Bioinformatics, vol 24, no. 10, pp. 1257-63, 2008.
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Systems Analysis of Bioenergetics and Growth of the Extreme Halophile Halobacterium salinarum.
PloS Computational Biology, vol 5, no. 4, pp. e1000332, 2009.
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Reconstruction, Modeling and Analysis of Haloarcheal Metabolic Networks.
PhD Thesis, LMU München, January 2009.
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Parameter estimation using Simulated Annealing for S-system models of biochemical networks.
Bioinformatics, vol 23, no. 4, pp. 480-486, 2006.
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Systems analysis of bioenergetics and growth of the extreme halophile Halobacterium salinarum.
PloS Computational Biology , vol 5, no. 4, pp. e1000332, 2009.
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Characterization of Growth and Metabolism of the Haloalkaliphile Natronomonas pharaonis.
PLoS Computational Biology, vol 6, no. 6, pp. e1000799, 2010.
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3D tomographic and single-particle reconstruction using level set methods.
Diploma Thesis, LFE Praktische Informatik und Bioinformatik / LMU München, August 2007.
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Prediction of Protein Secondary Structure.
Bachelor Thesis, LFE Bioinformatik / LMU München, March 2009.
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LiMB - Ein interaktiver Browser zur Analyse biomedizinischer Texte mit Hilfe von Textmining.
Diploma Thesis, LMU München, April 2006.
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MIRTFnet: analysis of miRNA regulated transcription factors.
PLoS One, pp. 6(8):e22519, August 2011.
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New Analysis Methods for Gene Expression Data via Construction and Incorporation of Biological Networks.
PhD Thesis, Ludwig-Maximilians-Universität München, 2004.
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Co-clustering of biological networks and gene expression data.
Bioinformatics, vol 18, no. 90001, pp. S145-S154 , 2002.
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ToPNet - an application for interactive analysis of expression data and biological networks.
Bioinformatics, vol 20, no. 9, pp. 1470-1471, Jun 2004.
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ProMiner: Organism-specific protein name detection using approximate string matching.
BioCreative Challenge Evaluation Workshop, 2004.
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Evaluation of structure prediction models using the ProML specification language.
Ninth International Conference on Intelligent Systems for Molecular Biology (ISMB 2001), vol Poster, 2001.
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Playing biology's name game: identifying protein names in scientific text.
, , , (eds.):
Proceedings of the 8th Pacific Symposium on Biocomputing (PSB 2003), Lihue, Hawaii, USA, January 3-7, 2003, pp. 403-414, 2003.
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ProML - The protein markup language for specification of protein sequences, structures and families.
, , (eds.):
German Conference on Bioinformatics (GCB 2001), Braunschweig, Germany, October 7-10, 2001 , pp. 58-67, 2001.
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ProML - the protein markup language for specification of protein sequences, structures and families.
In Silico Biol, vol 2, no. 3, pp. 313-24, 2002.
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Integration of Textmining Priors into Structural Inference of Bayesian Networks.
Bachelor Thesis, LFE Bioinformatik / LMU München, March 2009.
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Network Oriented Analysis of CLA Expression Data.
Bachelor Thesis, LFE Bioinformatik, LMU München, November 2009.
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Approximate Protein Folding in the HP Side Chain Model on Extended Cubic Lattices.
Discrete Applied Mathematics, vol 127, no. 1, pp. 163-177, 2003.
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Approximate Protein Folding in the HP Side Chain Model on Extended Cubic Lattices.
, , (eds.):
Computational Molecular Biology, Topics in Discrete Mathematics, vol 12, North Holland, 2003.
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Analysis of a Modification of Gusfield's Recursive Algorithm for Reconstructing Ultrametric Trees.
Information Processing Letters, vol 108, no. 4, pp. 222-225, 2008.
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Grundlegende Algorithmen - Einführung in den Entwurf und die Analyse effizienter Algorithmen.
2nd edition, Vieweg Verlag, May 2003.
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Comparative Analysis of Bos Taurus and Homo Sapiens DNA Microarrays.
Master Thesis, LMU München, September 2007.
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Characterisation and Visualisation of Protein Families based on Multicriterial Clustering.
Bachelor Thesis, LFE Praktische Informatik und Bioinformatik / LMU München, November 2004.
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Fast solution of Protein-3D-structures.
(ed.):
Coupling of Biological and Electronic Systems, Proceedings of the 2nd caesarium, pp. 59-78, Springer-Verlag, 2001.
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Crystal structure prediction with data mining.
J. Mol. Struct., vol 647, no. 1, pp. 17-39, 2003.
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Derivation of a scoring function for crystal structure prediction.
Acta Crystallogr A., vol 57, no. Pt4, pp. 442-50, 2001.
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Evaluation of mapping consistency between public gene and protein databases.
Bachelor Thesis, Ludwig-Maximilians-Universität München, November 2003.
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Ein Scheduling System für netzwerkorientierte Bioinformatik Arbeitsabläufe.
Bachelor Thesis, LMU München, December 2006.
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OBMASS: Entwicklung eines linearen Algorithmus zur Berechnung des Bounded Maximum Average Scoring Subsequence Problems.
Diploma Thesis, LFE Bioinformatik, LMU München, January 2007.
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Similarity-Based Analysis of Medium- and High Throughput Screening Data.
Diploma Thesis, LFE Praktische Informatik und Bioinformatik / LMU München, February 2007.
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Optimization of Homology-based Structure Models.
Bachelor Thesis, LFE Bioinformatik, LMU München, December 2011.
.
Similarity Based Methods for the Prediction of Protein Ligand Complexes.
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