Florian Erhard

E-Mail:	Florian.Erhard * at * bio.ifi.lmu.de
Telefon:	+49-89-2180-4066
Fax:	+49-89-2180-99-4066
Adresse:	Lehr- und Forschungseinheit Bioinformatik Institut für Informatik Ludwig-Maximilians-Universität München
	Amalienstr. 17, 80333 München
Raum:	3-07, 3. Etage

Forschung

Stochastische Simulation von Biochemischen Netzwerken (mehr)
miRNA target Vorhersage
Funktiono viraler miRNAs
Massenspektrometrie

Lehre

SS 2011	Betreuung der Vorlesung Algorithmische Bioinformatik: Bäume und Graphen
WS 2010 / 2011	Betreuung des GoBi
	Betreuung des Programmierprakikum
	Betreuung der Vorlesung Algorithmische Bioinformatik II
WS 2009 / 2010	Betreuung des GoBi
	Betreuung des Programmierprakikum
	Betreuung des Hauptseminars
SS 2009	Betreuung der Vorlesung Algorithmische Bioinformatik: Bäume und Graphen
	Betreuung des Hauptseminars
WS 2008 / 2009	Betreuung der Vorlesung Algorithmische Bioinformatik II
	Betreuung des Programmierprakikum

Publikationen

Submitted

Papers

Florian Erhard, Lea Haarup Gregersen, Markus Landthaler, Lars Dölken, Ralf Zimmer. RIP-chip enrichment analysis. European Conference on Computational Biology (ECCB2012), September 2012, Basel, Switzerland, Submitted.

BibTex

2012

Papers

Florian Erhard, Ralf Zimmer. Detecting outlier peptides in quantitative high-throughput mass spectrometry data. Journal of Proteomics, in press, 2012.

BibTex

2011

Papers

Florian Erhard, Ralf Zimmer. Detecting outlier peptides in quantitative high-throughput mass spectrometry data. Detecting outlier peptides in quantitative high-throughput mass spectrometry data, September 2011, Weihenstephan, Germany, 2011.

BibTex

2010

Papers

Florian Erhard, Caroline C. Friedel, Ralf Zimmer. FERN - Stochastic Simulation and Evaluation of Reaction Networks. Sangdun Choi (ed.): Systems Biology for Signaling Networks, Systems Biology, vol 1, Part 4, pp. 751-775, Springer, 2010.

BibTex

Lars Dölken, Georg Malterer, Florian Erhard, Sheila Kothe, Caroline C. Friedel, Guillaume Suffert, Lisa Marcinowski, Natalie Motsch, Stephanie Barth, Michaela Beizinger, Diana Lieber, Susanne M. Bailer, Reinhard Hoffmann, Zsolt Ruzsics, Elisabeth Kremmer, Sebastien Pfeffer, Ralf Zimmer, Ulrich H. Koszinowski, Friedrich Grässer, Gunter Meister, Jürgen Haas. Systemic Analysis of Viral and Cellular miRNA Targets in Cells Latently Infected with Human gamma-Herpesviruses through RISC Immunoprecipitation Assays. Cell Host & Microbe, vol 7, no. 4, pp. 324-334, April 2010.

BibTex

Florian Erhard, Ralf Zimmer. Classification of ncRNAs using position and size information in deep sequencing data. Bioinformatics, vol 26, no. 18, pp. i426-i432, September 2010.

BibTex

Lukas Windhager, Florian Erhard, Ralf Zimmer. Fuzzy modeling. Ina Koch, Wolfgang Reisig, Falk Schreiber (eds.): Modeling in Systems Biology: The Petri Net Approach, Springer, 2010.

BibTex

2009

Papers

Fabian Birzele, Gergely Csaba, Florian Erhard, Caroline C. Friedel, R. Küffner, Tobias Petri, Lukas Windhager, Ralf Zimmer. Algorithmische Systembiologie mit Petrinetzen – Von qualitativen zu quantitativen Systemmodellen. Informatik-Spektrum, vol 32, no. 4, pp. 310-319, 2009.

DOI
Journal version

BibTex

2008

Papers

Florian Erhard, Caroline C. Friedel, Ralf Zimmer. FERN - a Java framework for stochastic simulation and evaluation of reaction networks. BMC Bioinformatics, vol 9, no. 1, pp. 356, 2008.

BibTex

Theses

Florian Erhard. Petri Net Based System for Spatio-Temporal Simulation of Gene Regulation. Diploma Thesis, LFE Bioinformatik/LMU München, July 2008.

BibTex

Software

FERN	Java framework for stochastic simulation and analysis of reaction networks (available as java library, Cytoscape or CellDesigner plugin)
ALPS	Alignment of Pattern Matrices Score
PNMA	Petri Net Modeling Application - currently under development

Aktuelles

Mitarbeiter

Benjamin Albrecht

Thomas Bonfert

Gergely Csaba

Caroline Friedel

Ludwig Geistlinger

Orland Gonzalez

Volker Heun

Robert Küffner

Haroon Naeem

Robert Pesch

Tobias Petri

Franziska Schneider

Konrad Schreiber

Frank Steiner

Pegah Tavakkolkhah

Lukas Windhager

Ralf Zimmer

Alumni

Studium

Publikationen

Forschung

Drittmittelprojekte

Software/Services

Kontakt

Florian Erhard