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Gergely Csaba

Gergely Csaba
E-Mail: csaba * at * bio.ifi.lmu.de
Telefon: +49-89-2180-4046
Fax: +49-89-2180-99-4046
Adresse:

Lehr- und Forschungseinheit Bioinformatik

Institut für Informatik

Ludwig-Maximilians-Universität München

Amalienstr. 17, 80333 München
Raum: 4-07, 4. Etage
Publikationen
2012
Papers
Thomas Bonfert, Gergely Csaba, Ralf Zimmer, Caroline C. Friedel. A context-based approach to identify the most likely mapping for RNA-seq experiments. BMC Bioinformatics, vol 13(Suppl 6), pp. S9, 2012.
2011
Papers
Ludwig Geistlinger, Gergely Csaba, Robert Küffner, Nicola Mulder, Ralf Zimmer. From Sets to Graphs: Towards a Realistic Enrichment Analysis of Transcriptomic Systems. Bioinformatics, Bioinformatics, vol 27, no. 13, pp. i366-i373, 2011.
2010
Papers
Haroon Naeem, R. Küffner, Gergely Csaba, Ralf Zimmer. miRSel: automated extraction of associations between microRNAs and genes from the biomedical literature. BMC Bioinformatics, vol 11, pp. 135, 16 March 2010 2010.
Gergely Csaba, Ralf Zimmer. Vorescore - fold recognition improved by rescoring of protein structure models. Bioinformatics, vol 26, no. 18, pp. i482-i488, September 2010.
2009
Papers
Gergely Csaba, Fabian Birzele, Ralf Zimmer. Systematic Comparison of SCOP and CATH: A new Gold Standard for Protein Structure Analysis. BMC Structural Biology, vol 9, no. 23, 2009.
Fabian Birzele, Gergely Csaba, Florian Erhard, Caroline C. Friedel, R. Küffner, Tobias Petri, Lukas Windhager, Ralf Zimmer. Algorithmische Systembiologie mit Petrinetzen – Von qualitativen zu quantitativen Systemmodellen. Informatik-Spektrum, vol 32, no. 4, pp. 310-319, 2009.
2008
Papers
Fabian Birzele, Gergely Csaba, Ralf Zimmer. Alternative splicing and protein structure evolution. Nucleic Acids Res., vol 36, pp. 550–558, Feb 2008.
Gergely Csaba, Fabian Birzele, Ralf Zimmer. Protein structure alignment considering phenotypic plasticity. Bioinformatics, vol 24, pp. 98–104, Aug 2008.
2007
Papers
Fabian Birzele, Jan Gewehr, Gergely Csaba, Ralf Zimmer. Vorolign - Fast Structural Alignment using Voronoi Contacts. Bioinformatics, vol 23, no. 2, pp. e205-e211, 2007.
Theses
Gergely Csaba. Phenotypic Plasticity as a Measure for Protein Structural Similarity. Master Thesis, LFE Praktische Informatik und Bioinformatik / LMU München, November 2007.
2006
Theses
Gergely Csaba. Analysis of Protein Sequence-Structure Alignments. Bachelor Thesis, LMU München, December 2006.