fern.network
Interface ComplexDependenciesPropensityCalculator
- All Superinterfaces:
- PropensityCalculator
- All Known Implementing Classes:
- CellDesignerPropensityCalculator, SBMLPropensityCalculator
public interface ComplexDependenciesPropensityCalculator
- extends PropensityCalculator
In a SBML network, the propensities of reaction are calculated by using the
kineticLaw tag, which contains a MathML expression. Since therein arbitrary species can
be included, there must be a way to fetch dependencies between the reactions in order to
create the DependencyGraph
.
- Author:
- Florian Erhard
Method Summary |
List<Integer> |
getKineticLawSpecies(int reaction)
Gets the indices of the species that are included in the calculation of
the given reaction. |
getKineticLawSpecies
List<Integer> getKineticLawSpecies(int reaction)
- Gets the indices of the species that are included in the calculation of
the given reaction.
- Parameters:
reaction
- index of the reaction
- Returns:
- indices of the species included in the reaction's kinetic law