fern.simulation.algorithm
Class TauLeapingRelativeBoundSimulator
java.lang.Object
fern.simulation.Simulator
fern.simulation.algorithm.GillespieEnhanced
fern.simulation.algorithm.AbstractBaseTauLeaping
fern.simulation.algorithm.AbstractTauLeapingPropensityBoundSimulator
fern.simulation.algorithm.TauLeapingRelativeBoundSimulator
public class TauLeapingRelativeBoundSimulator
- extends AbstractTauLeapingPropensityBoundSimulator
There are some possibilities to bind the expected change of the propensities by a
value epsilon in order to fulfill the leap condition. Here the expected change is bound
to individual propensities.
Daniel T. Gillespie, Approximate accelerated stochastic simulation
of chemically reacting systems, Journal of chemical physics vol 115, nr 4 (2001); Cao et al., Efficient
step size selection for the tau-leaping simulation method, Journal of chemical physics 124, 044109 (2006)
- Author:
- Florian Erhard
Method Summary |
String |
getName()
Returns the name of this simulator |
Methods inherited from class fern.simulation.algorithm.AbstractBaseTauLeaping |
getEpsilon, getLangevinThreshold, getNCritical, getNumSimpleCalls, getUseSimpleFactor, isVerbose, performStep, setEpsilon, setLangevinThreshold, setNCritical, setNumSimpleCalls, setUseSimpleFactor, setVerbose |
Methods inherited from class fern.simulation.Simulator |
addObserver, getAmount, getNet, getNextThetaEvent, getPropensity, getPropensityCalculator, getTime, getVolume, isInterpolateTheta, registerNewTheta, setInterpolateTheta, start, start |
TauLeapingRelativeBoundSimulator
public TauLeapingRelativeBoundSimulator(Network net)
getName
public String getName()
- Description copied from class:
AbstractBaseTauLeaping
- Returns the name of this simulator
- Overrides:
getName
in class AbstractBaseTauLeaping
- Returns:
- simulator name