Uses of Class
fern.simulation.observer.Observer

Packages that use Observer
fern.cytoscape Provides the classes for the cytoscape plugin. 
fern.example Contains examples and demonstrations of the framework. 
fern.network.sbml Provides the classes for parsing and using sbml based networks. 
fern.simulation Provides algorithms for simulating reaction network as well as methods for observer certain aspects of a simulation. 
fern.simulation.observer Provides classes to observe certain aspects of simulations. 
 

Uses of Observer in fern.cytoscape
 

Subclasses of Observer in fern.cytoscape
 class CytoscapeColorChangeObserver
           
 

Uses of Observer in fern.example
 

Subclasses of Observer in fern.example
 class CellGrowthObserver
          Does not observe anything, but it controls the reaction networks cell.
 

Uses of Observer in fern.network.sbml
 

Subclasses of Observer in fern.network.sbml
 class SBMLEventHandlerObserver
          Observer which handles an event of a sbml model.
 

Uses of Observer in fern.simulation
 

Methods in fern.simulation that return Observer
 Observer Simulator.addObserver(Observer observer)
          Adds an observer to the list of observers.
 

Methods in fern.simulation with parameters of type Observer
 Observer Simulator.addObserver(Observer observer)
          Adds an observer to the list of observers.
 void Simulator.registerNewTheta(Observer obs, double theta)
          Is called by setTheta(double).
 

Uses of Observer in fern.simulation.observer
 

Subclasses of Observer in fern.simulation.observer
 class AmountAtMomentObserver
          Observes the amount of some molecule species at a certain moment.
 class AmountIntervalObserver
          Observes amounts of molecule species repeatedly after certain intervals.
 class FireTypeObserver
          Observes the different types of firings.
 class InstantOutputObserver
          Simply prints out every event that the simulator reports to the observer.
 class IntervalObserver
          Base class for observing certain aspects repeatedly after a given interval.
 class LeapObserver
          Observes the amount of given molecule species at each step.
 class MultiAmountIntervalObserver
          Observes amounts of molecule species repeatedly after certain intervals.
 class RandomNumberGeneratorCallObserver
          Observes the calls to the random number generator and count the number of drawn random number of different distributions.
 class ReactionIntervalObserver
          Observes number of firings of reactions repeatedly after certain intervals.
 class TriggerObserver