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Packages that use SimulationController | |
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fern.simulation | Provides algorithms for simulating reaction network as well as methods for observer certain aspects of a simulation. |
fern.simulation.algorithm | Provides algorithms for stochastic simultion of reaction networks. |
fern.simulation.controller | Provides classes to control the simulations. |
fern.simulation.observer | Provides classes to observe certain aspects of simulations. |
Uses of SimulationController in fern.simulation |
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Methods in fern.simulation with parameters of type SimulationController | |
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abstract void |
Simulator.performStep(SimulationController control)
Performs one simulation step. |
void |
Simulator.start(SimulationController control)
Start the simulation with the given SimulationController . |
Uses of SimulationController in fern.simulation.algorithm |
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Methods in fern.simulation.algorithm with parameters of type SimulationController | |
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void |
CompositionRejection.performStep(SimulationController control)
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void |
HybridMaximalTimeStep.performStep(SimulationController control)
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void |
AbstractBaseTauLeaping.performStep(SimulationController control)
Performs a tau leaping step. |
void |
GillespieSimple.performStep(SimulationController control)
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void |
GillespieEnhanced.performStep(SimulationController control)
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void |
GibsonBruckSimulator.performStep(SimulationController control)
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Uses of SimulationController in fern.simulation.controller |
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Classes in fern.simulation.controller that implement SimulationController | |
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class |
AmountLowerThanController
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class |
AndController
Implements a SimulationController composed of many SimulationController . |
class |
DefaultController
The probably most common implementation of an SimulationController . |
class |
OrController
Implements a SimulationController composed of many SimulationController . |
Constructors in fern.simulation.controller with parameters of type SimulationController | |
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AndController(SimulationController... controllers)
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OrController(SimulationController... controllers)
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Uses of SimulationController in fern.simulation.observer |
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Classes in fern.simulation.observer that implement SimulationController | |
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class |
AmountAtMomentObserver
Observes the amount of some molecule species at a certain moment. |
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