fern.cytoscape
Class CytoscapeNetworkWrapper
java.lang.Object
fern.network.AbstractNetworkImpl
fern.cytoscape.CytoscapeNetworkWrapper
- All Implemented Interfaces:
- Network
public class CytoscapeNetworkWrapper
- extends AbstractNetworkImpl
Methods inherited from class fern.network.AbstractNetworkImpl |
getAmountManager, getAnnotationManager, getName, getNumReactions, getNumSpecies, getProducts, getPropensityCalculator, getReactants, getReactionName, getSpeciesByName, getSpeciesMapping, getSpeciesName |
CytoscapeNetworkWrapper
public CytoscapeNetworkWrapper(NetworkChecker checker,
CyNetwork net,
CyNetworkView cyView,
CyAttributes nodeAttr)
getInitialAmount
public long getInitialAmount(int species)
- Description copied from interface:
Network
- Gets the initial amount of the specified molecule species.
- Parameters:
species
- index of the species
- Returns:
- initial amount of the species
setInitialAmount
public void setInitialAmount(int species,
long value)
- Description copied from interface:
Network
- Sets the initial amount of the specified molecule species.
- Parameters:
species
- index of the speciesvalue
- initial amount of the species
getNodeAttributeObject
public CyAttributes getNodeAttributeObject()
getNetworkViewObject
public CyNetworkView getNetworkViewObject()
getReactionView
public NodeView getReactionView(int index)
getSpeciesView
public NodeView getSpeciesView(int index)
getNetworkChecker
public NetworkChecker getNetworkChecker()