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Packages that use Observer | |
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fern.cytoscape | Provides the classes for the cytoscape plugin. |
fern.example | Contains examples and demonstrations of the framework. |
fern.network.sbml | Provides the classes for parsing and using sbml based networks. |
fern.simulation | Provides algorithms for simulating reaction network as well as methods for observer certain aspects of a simulation. |
fern.simulation.observer | Provides classes to observe certain aspects of simulations. |
Uses of Observer in fern.cytoscape |
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Subclasses of Observer in fern.cytoscape | |
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class |
CytoscapeColorChangeObserver
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Uses of Observer in fern.example |
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Subclasses of Observer in fern.example | |
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class |
CellGrowthObserver
Does not observe anything, but it controls the reaction networks cell. |
Uses of Observer in fern.network.sbml |
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Subclasses of Observer in fern.network.sbml | |
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class |
SBMLEventHandlerObserver
Observer which handles an event of a sbml model. |
Uses of Observer in fern.simulation |
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Methods in fern.simulation that return Observer | |
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Observer |
Simulator.addObserver(Observer observer)
Adds an observer to the list of observers. |
Methods in fern.simulation with parameters of type Observer | |
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Observer |
Simulator.addObserver(Observer observer)
Adds an observer to the list of observers. |
void |
Simulator.registerNewTheta(Observer obs,
double theta)
Is called by setTheta(double) . |
Uses of Observer in fern.simulation.observer |
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Subclasses of Observer in fern.simulation.observer | |
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class |
AmountAtMomentObserver
Observes the amount of some molecule species at a certain moment. |
class |
AmountIntervalObserver
Observes amounts of molecule species repeatedly after certain intervals. |
class |
FireTypeObserver
Observes the different types of firings. |
class |
InstantOutputObserver
Simply prints out every event that the simulator reports to the observer. |
class |
IntervalObserver
Base class for observing certain aspects repeatedly after a given interval. |
class |
LeapObserver
Observes the amount of given molecule species at each step . |
class |
MultiAmountIntervalObserver
Observes amounts of molecule species repeatedly after certain intervals. |
class |
RandomNumberGeneratorCallObserver
Observes the calls to the random number generator and count the number of drawn random number of different distributions. |
class |
ReactionIntervalObserver
Observes number of firings of reactions repeatedly after certain intervals. |
class |
TriggerObserver
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