Uses of Interface
fern.network.AnnotationManager

Packages that use AnnotationManager
fern.cytoscape Provides the classes for the cytoscape plugin. 
fern.network Provides general classes and interfaces for storing network data. 
fern.network.fernml Provides the classes for parsing and using FernML based networks. 
fern.network.modification Provides classes for modifications of networks. 
 

Uses of AnnotationManager in fern.cytoscape
 

Classes in fern.cytoscape that implement AnnotationManager
 class CytoscapeAnnotationManager
           
 

Uses of AnnotationManager in fern.network
 

Classes in fern.network that implement AnnotationManager
 class AnnotationManagerImpl
          Base implementation of the AnnotationManager interface.
 

Methods in fern.network that return AnnotationManager
 AnnotationManager AbstractNetworkImpl.getAnnotationManager()
           
 AnnotationManager Network.getAnnotationManager()
          Gets the AnnotationManager for this network.
 

Uses of AnnotationManager in fern.network.fernml
 

Classes in fern.network.fernml that implement AnnotationManager
 class FernMLAnnotationManager
          AnnotationManager for FernMLNetworks.
 

Uses of AnnotationManager in fern.network.modification
 

Methods in fern.network.modification that return AnnotationManager
 AnnotationManager ExtractSubNetwork.getAnnotationManager()
          Gets an AnnotationManager for the redirected index space.
 AnnotationManager ModifierNetwork.getAnnotationManager()
          Gets the AnnotationManager of the original network
 AnnotationManager CatalysedNetwork.getAnnotationManager()
           
 AnnotationManager ReversibleNetwork.getAnnotationManager()
          Gets the AnnotationManager for the modified network.
 AnnotationManager MultiplierNetwork.getAnnotationManager()
          Gets the AnnotationManager for the modified network.