fern.example
Class DecayingDimerizingHistogramDistances
java.lang.Object
fern.example.DecayingDimerizingHistogramDistances
public class DecayingDimerizingHistogramDistances
- extends Object
Demonstration of performance and accuracy differences of the different
simulation algorithms. The reaction network proposed in [1]
are used to calculate histograms and the histogram distances [4] of the amount
of some molecular species at a special time point in order to compare results
of different algorithms. This reproduces the values of Fig. 10 of [3].
Running it the first time will cost some time, the results are saved and
then loaded in further runs.
For references see
[1] Gillespie D.T., J. Comput. Phys. 22, 403 (1976),
[2] D.Gillespie, J.Chem.Phys. 115, 1716 (2001),
[3] Cao Y., J. Chem. Phys. 124, 044109 (2006) ,
[4] Cao Y. and Petzold L., J. Comp. Phys. 212, 6�24 (2006).
- Author:
- Florian Erhard
DecayingDimerizingHistogramDistances
public DecayingDimerizingHistogramDistances()
main
public static void main(String[] args)
throws IOException,
org.jdom.JDOMException
- Throws:
IOException
org.jdom.JDOMException