fern.cytoscape
Class NetworkChecker

java.lang.Object
  extended by fern.cytoscape.NetworkChecker

public class NetworkChecker
extends Object


Nested Class Summary
static interface NetworkChecker.EdgeClassifier
           
 class NetworkChecker.EdgeClassifierByDirection
           
 class NetworkChecker.EdgeClassifierByIdentifier
           
static interface NetworkChecker.NodeClassifier
           
 class NetworkChecker.NodeClassifierByAnnotation<T>
           
 class NetworkChecker.NodeParameter
           
 
Field Summary
 String coefficient
           
 String initialAmount
           
 String nodeType
           
 Object nodeTypeReaction
           
 Object nodeTypeSpecies
           
 
Constructor Summary
NetworkChecker()
           
NetworkChecker(String nodeType, Object nodeTypeReaction, Object nodeTypeSpecies, String coefficient, String initialAmount)
           
 
Method Summary
 void check()
           
 NetworkChecker.EdgeClassifier getEdgeClassifier()
           
 NetworkChecker.NodeClassifier getNodeClassifier()
           
 NetworkChecker.NodeParameter getNodeParameter()
           
 boolean isValid()
           
 
Methods inherited from class java.lang.Object
equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait
 

Field Detail

nodeType

public String nodeType

nodeTypeReaction

public Object nodeTypeReaction

nodeTypeSpecies

public Object nodeTypeSpecies

coefficient

public String coefficient

initialAmount

public String initialAmount
Constructor Detail

NetworkChecker

public NetworkChecker()

NetworkChecker

public NetworkChecker(String nodeType,
                      Object nodeTypeReaction,
                      Object nodeTypeSpecies,
                      String coefficient,
                      String initialAmount)
Method Detail

isValid

public boolean isValid()

check

public void check()

getNodeClassifier

public NetworkChecker.NodeClassifier getNodeClassifier()

getEdgeClassifier

public NetworkChecker.EdgeClassifier getEdgeClassifier()

getNodeParameter

public NetworkChecker.NodeParameter getNodeParameter()