fern.example
Class DecayingDimerizingInteractive
java.lang.Object
fern.example.DecayingDimerizingInteractive
public class DecayingDimerizingInteractive
- extends Object
Demonstration of performance and accuracy differences of the different
simulation algorithms. The reaction network proposed in [1]
are used to calculate histograms and the histogram distances [4] of the amount
of some molecular species at a special time point in order to compare results
of different algorithms. Here, Fig. 3 of [3] is reproduced and the gain
of accuracy when using a species bounded tau leaping procedure without
loss of performance is shown.
For references see
[1] Gillespie D.T., J. Comput. Phys. 22, 403 (1976),
[2] D.Gillespie, J.Chem.Phys. 115, 1716 (2001),
[3] D.Gillespie and L.Petzold, J.Chem.Phys. 119, 8229 (2003),
[4] Cao Y. and Petzold L., J. Comp. Phys. 212, 6�24 (2006).
- Author:
- Florian Erhard
DecayingDimerizingInteractive
public DecayingDimerizingInteractive()
main
public static void main(String[] args)
throws IOException,
org.jdom.JDOMException
- Throws:
IOException
org.jdom.JDOMException