Uses of Interface
fern.simulation.controller.SimulationController

Packages that use SimulationController
fern.simulation Provides algorithms for simulating reaction network as well as methods for observer certain aspects of a simulation. 
fern.simulation.algorithm Provides algorithms for stochastic simultion of reaction networks. 
fern.simulation.controller Provides classes to control the simulations. 
fern.simulation.observer Provides classes to observe certain aspects of simulations. 
 

Uses of SimulationController in fern.simulation
 

Methods in fern.simulation with parameters of type SimulationController
abstract  void Simulator.performStep(SimulationController control)
          Performs one simulation step.
 void Simulator.start(SimulationController control)
          Start the simulation with the given SimulationController.
 

Uses of SimulationController in fern.simulation.algorithm
 

Methods in fern.simulation.algorithm with parameters of type SimulationController
 void CompositionRejection.performStep(SimulationController control)
           
 void HybridMaximalTimeStep.performStep(SimulationController control)
           
 void AbstractBaseTauLeaping.performStep(SimulationController control)
          Performs a tau leaping step.
 void GillespieSimple.performStep(SimulationController control)
           
 void GillespieEnhanced.performStep(SimulationController control)
           
 void GibsonBruckSimulator.performStep(SimulationController control)
           
 

Uses of SimulationController in fern.simulation.controller
 

Classes in fern.simulation.controller that implement SimulationController
 class AmountLowerThanController
           
 class AndController
          Implements a SimulationController composed of many SimulationController.
 class DefaultController
          The probably most common implementation of an SimulationController.
 class OrController
          Implements a SimulationController composed of many SimulationController.
 

Constructors in fern.simulation.controller with parameters of type SimulationController
AndController(SimulationController... controllers)
           
OrController(SimulationController... controllers)
           
 

Uses of SimulationController in fern.simulation.observer
 

Classes in fern.simulation.observer that implement SimulationController
 class AmountAtMomentObserver
          Observes the amount of some molecule species at a certain moment.