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Packages that use PropensityCalculator | |
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fern.cellDesigner | |
fern.network | Provides general classes and interfaces for storing network data. |
fern.network.creation | Provides classes for the evolution of networks. |
fern.network.modification | Provides classes for modifications of networks. |
fern.network.sbml | Provides the classes for parsing and using sbml based networks. |
fern.simulation | Provides algorithms for simulating reaction network as well as methods for observer certain aspects of a simulation. |
Uses of PropensityCalculator in fern.cellDesigner |
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Classes in fern.cellDesigner that implement PropensityCalculator | |
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class |
CellDesignerPropensityCalculator
Propensity calculator which is used for SBMLNetwork s. |
Uses of PropensityCalculator in fern.network |
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Subinterfaces of PropensityCalculator in fern.network | |
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interface |
ComplexDependenciesPropensityCalculator
In a SBML network, the propensities of reaction are calculated by using the kineticLaw tag, which contains a MathML expression. |
interface |
KineticConstantPropensityCalculator
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interface |
PartialDerivativePropensityCalculator
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Classes in fern.network that implement PropensityCalculator | |
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class |
AbstractKineticConstantPropensityCalculator
Base implementation of a PropensityCalculator . |
class |
ArrayKineticConstantPropensityCalculator
Implementation of an AbstractKineticConstantPropensityCalculator which uses
an array to store the constants for each reaction. |
Methods in fern.network that return PropensityCalculator | |
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PropensityCalculator |
AbstractNetworkImpl.getPropensityCalculator()
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PropensityCalculator |
Network.getPropensityCalculator()
Gets the PropensityCalculator for this network. |
Uses of PropensityCalculator in fern.network.creation |
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Methods in fern.network.creation that return PropensityCalculator | |
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PropensityCalculator |
AutocatalyticNetwork.getReversePropensityCalculator()
Gets the PropensityCalculator which has to be used for instantiation
of the ReversibleNetwork . |
Uses of PropensityCalculator in fern.network.modification |
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Methods in fern.network.modification that return PropensityCalculator | |
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PropensityCalculator |
ExtractSubNetwork.getPropensityCalculator()
Gets the PropensityCalculator for the extracted subnet. |
PropensityCalculator |
ModifierNetwork.getPropensityCalculator()
Gets the PropensityCalculator of the original network. |
PropensityCalculator |
CatalysedNetwork.getPropensityCalculator()
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PropensityCalculator |
ReversibleNetwork.getPropensityCalculator()
Gets the PropensityCalculator for the modified network. |
PropensityCalculator |
MultiplierNetwork.getPropensityCalculator()
Gets the PropensityCalculator for the modified network. |
Constructors in fern.network.modification with parameters of type PropensityCalculator | |
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ReversibleNetwork(Network originalNet,
PropensityCalculator reversiblePropensityCalculator)
Creates a new network from an original network and virtually creates for each reaction a new inverse reaction. |
Uses of PropensityCalculator in fern.network.sbml |
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Classes in fern.network.sbml that implement PropensityCalculator | |
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class |
SBMLPropensityCalculator
Propensity calculator which is used for SBMLNetwork s. |
Uses of PropensityCalculator in fern.simulation |
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Methods in fern.simulation that return PropensityCalculator | |
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PropensityCalculator |
Simulator.getPropensityCalculator()
Gets the PropensityCalculator . |
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