Uses of Package
fern.simulation

Packages that use fern.simulation
fern.benchmark Provides classes for benchmarking simulations (time benchmarks, histogram distance calculation). 
fern.cellDesigner   
fern.cellDesigner.ui   
fern.cytoscape Provides the classes for the cytoscape plugin. 
fern.example Contains examples and demonstrations of the framework. 
fern.network Provides general classes and interfaces for storing network data. 
fern.network.sbml Provides the classes for parsing and using sbml based networks. 
fern.simulation Provides algorithms for simulating reaction network as well as methods for observer certain aspects of a simulation. 
fern.simulation.algorithm Provides algorithms for stochastic simultion of reaction networks. 
fern.simulation.controller Provides classes to control the simulations. 
fern.simulation.observer Provides classes to observe certain aspects of simulations. 
 

Classes in fern.simulation used by fern.benchmark
Simulator
          Base class for stochastic simulators.
 

Classes in fern.simulation used by fern.cellDesigner
Simulator
          Base class for stochastic simulators.
 

Classes in fern.simulation used by fern.cellDesigner.ui
Simulator
          Base class for stochastic simulators.
 

Classes in fern.simulation used by fern.cytoscape
Simulator
          Base class for stochastic simulators.
Simulator.FireType
          Defines different types of a firing for reactions.
 

Classes in fern.simulation used by fern.example
Simulator
          Base class for stochastic simulators.
Simulator.FireType
          Defines different types of a firing for reactions.
 

Classes in fern.simulation used by fern.network
Simulator
          Base class for stochastic simulators.
 

Classes in fern.simulation used by fern.network.sbml
Simulator
          Base class for stochastic simulators.
Simulator.FireType
          Defines different types of a firing for reactions.
 

Classes in fern.simulation used by fern.simulation
Simulator.FireType
          Defines different types of a firing for reactions.
 

Classes in fern.simulation used by fern.simulation.algorithm
Simulator
          Base class for stochastic simulators.
 

Classes in fern.simulation used by fern.simulation.controller
Simulator
          Base class for stochastic simulators.
 

Classes in fern.simulation used by fern.simulation.observer
Simulator
          Base class for stochastic simulators.
Simulator.FireType
          Defines different types of a firing for reactions.