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public interface AnnotationManager
AnnotationManager objects are the places, where static (or quasi-static) properties of a network are stored. At this time, all the annotations and the initial amounts of the species belong to the static properties. Annotations are only supposed to hold data which
Method Summary | |
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boolean |
containsNetworkAnnotation(String typ)
Returns true iff the network contains an annotation of the specified type. |
boolean |
containsReactionAnnotation(int reaction,
String typ)
Returns true iff the reaction contains an annotation of the specified type. |
boolean |
containsSpeciesAnnotation(int species,
String typ)
Returns true iff the species contains an annotation of the specified type. |
String |
getNetworkAnnotation(String typ)
Gets the network annotation of the specified field. |
Collection<String> |
getNetworkAnnotationTypes()
Gets the names of the network reaction. |
String |
getReactionAnnotation(int reaction,
String typ)
Gets the reaction annotation of the specified field. |
Collection<String> |
getReactionAnnotationTypes(int reaction)
Gets the names of the species reaction. |
String |
getSpeciesAnnotation(int species,
String typ)
Gets the species annotation of the specified field. |
Collection<String> |
getSpeciesAnnotationTypes(int species)
Gets the names of the species annotations. |
void |
setNetworkAnnotation(String typ,
String annotation)
Sets the network annotation of the specified field. |
void |
setReactionAnnotation(int reaction,
String typ,
String annotation)
Sets the reaction annotation of the specified field. |
void |
setSpeciesAnnotation(int species,
String typ,
String annotation)
Sets the species annotation of the specified field. |
Method Detail |
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boolean containsSpeciesAnnotation(int species, String typ)
species
- index of the speciestyp
- field name of the annotation
Collection<String> getSpeciesAnnotationTypes(int species)
species
- index of the species
String getSpeciesAnnotation(int species, String typ)
species
- index of the speciestyp
- name of the field
void setSpeciesAnnotation(int species, String typ, String annotation)
species
- index of the speciestyp
- name of the fieldannotation
- species annotationboolean containsReactionAnnotation(int reaction, String typ)
reaction
- index of the reactiontyp
- field name of the annotation
Collection<String> getReactionAnnotationTypes(int reaction)
reaction
- index of the reaction
String getReactionAnnotation(int reaction, String typ)
reaction
- index of the reactiontyp
- name of the field
void setReactionAnnotation(int reaction, String typ, String annotation)
reaction
- index of the reactiontyp
- name of the fieldannotation
- reaction annotationboolean containsNetworkAnnotation(String typ)
typ
- field name of the annotation
Collection<String> getNetworkAnnotationTypes()
String getNetworkAnnotation(String typ)
typ
- name of the field
void setNetworkAnnotation(String typ, String annotation)
typ
- name of the fieldannotation
- network annotation
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