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See:
Description
Interface Summary | |
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AmountManager | The AmountManager is one of the most important connections between a
Network and a Simulator . |
AnnotationManager | AnnotationManager objects are the places, where static (or quasi-static) properties of a network are stored. |
ComplexDependenciesPropensityCalculator | In a SBML network, the propensities of reaction are calculated by using the kineticLaw tag, which contains a MathML expression. |
KineticConstantPropensityCalculator | |
Network | The central interface of the whole framework. |
PartialDerivativePropensityCalculator | |
PropensityCalculator | A PropensityCalculator is the way, a Network tells a Simulator
how to calculate propensities for the reactions. |
Class Summary | |
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AbstractKineticConstantPropensityCalculator | Base implementation of a PropensityCalculator . |
AbstractNetworkImpl | Base implementation for the Network interface. |
AnnotationManagerImpl | Base implementation of the AnnotationManager interface. |
ArrayKineticConstantPropensityCalculator | Implementation of an AbstractKineticConstantPropensityCalculator which uses
an array to store the constants for each reaction. |
ConstantAmountManager | |
DefaultAmountManager | Default implementation of an amount manager, that stores the amounts in arrays. |
NetworkLoader |
Exception Summary | |
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FeatureNotSupportedException |
Provides general classes and interfaces for storing network data.
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