Constant Field Values


Contents
halo.data.*

halo.data.Data
public static final int AVERAGEFIRST 2
public static final java.lang.String GENEDEFAULT "gene_name"
public static final java.lang.String LOGEN "log(e\'/n\')"
public static final java.lang.String LOGEU "log(e\'/u\')"
public static final java.lang.String LOGUN "log(u\'/n\')"
public static final int RATIOFIRST 1
public static final int REPLICATE 3

halo.data.biascorrection.RCorrelationCoefficient
public static final java.lang.String KENDAL "kendal"
public static final java.lang.String PEARSON "pearson"
public static final java.lang.String SPEARMAN "spearman"

halo.examples.*

halo.examples.SampleUseCase1
public static final java.lang.String DATAFILE "data/Example_mouse.txt"
public static final java.lang.String SEQUENCEFILE "data/sequences_mouse.txt"

halo.examples.SampleUseCase3
public static final java.lang.String PATHTOR "/home/proj/software/R/Unix/R-2.10.0/bin"

halo.halflife.*

halo.halflife.HalfLife
public static final java.lang.String NEWLY "new"
public static final java.lang.String NEWPRE "new/pre"
public static final java.lang.String PRE "pre"

halo.halflife.HalfLifeWriter
public static final int BOTH 3
public static final int HALFLIFE 1
public static final int RATIO 2

halo.normalization.*

halo.normalization.Normalization
public static final int UNDEF -1

halo.tools.*

halo.tools.Tools
public static final java.lang.String HOMEPAGE "http://www.bio.ifi.lmu.de/software/HALO"
public static final java.lang.String HOMEPAGEDOC "http://www.bio.ifi.lmu.de/files/Software/halo/doc/index.html"
public static final java.lang.String LIBRARYNAME "HALO"
public static final java.lang.String VERSION "1.3"

halo.userinterface.*

halo.userinterface.cmdline.CmdHalfLife
public static final java.lang.String NEW "new"
public static final java.lang.String NEWPRE "new/pre"
public static final java.lang.String PRE "pre"

halo.userinterface.cmdline.CmdNormalization
public static final java.lang.String STANDARD "standard"

halo.userinterface.gui.Gui
public static final int UNDEF -1

halo.userinterface.gui.GuiFilterData
public static final java.lang.String PQS "pqs"
public static final java.lang.String PQSMIN "pqsMin"
public static final java.lang.String PRESENT "present"
public static final java.lang.String THRESHOLD "threshold"

halo.userinterface.gui.GuiHalfLife
public static final java.lang.String EU "new/pre"
public static final java.lang.String NEW "new"
public static final java.lang.String PRE "pre"

halo.userinterface.gui.GuiNormal
public static final java.lang.String MEDIAN "median"
public static final java.lang.String STANDARD "standard"

halo.userinterface.gui.session.Session
public static final java.lang.String ALPHACELLDIV "alphaCellDiv"
public static final java.lang.String ALPHACONSTANT "alphaConstant"