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E

endRScript() - Method in class halo.data.biascorrection.RMethods
End the writing of the R script
error(String, Component) - Static method in class halo.userinterface.gui.guitools.DisplayWarnings
Shows an error dialog
EU - Static variable in class halo.userinterface.gui.GuiHalfLife
 
evaluate(String, int, String, String, HashMap<String, Double>, boolean) - Method in class halo.data.Data
Method for the Uracil-based evaluation of the values: Compares (average) uracil number of the sequence to logarithm of the ratio.
evaluateFasta(String, String, HashMap<String, Double>, boolean) - Method in class halo.userinterface.gui.GuiFilterData
Starts the evaluation using the multiple fasta file
extractFlags(String[]) - Static method in class halo.userinterface.cmdline.CmdFilterData
Takes the input options and sets all necessary variables accordingly
extractFlags(String[]) - Static method in class halo.userinterface.cmdline.CmdNormalization
Translates the flags of the options array into values for the variables used for calculation

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