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F

Filter - Class in halo.data
Provides methods for filtering the values contained in a Data object
Filter() - Constructor for class halo.data.Filter
 
filter(Data, double) - Static method in class halo.data.Filter
removes all experiments where at least one of the values is beneath a certain threshold Commandline option -f threshold='value'
filterAbsent(Data, ArrayList<String>, String, int) - Static method in class halo.data.Filter
Removes values that are defined as 'absent' in the attribute list Commandline option -f present='label1,label2,...
filterCorrectionBias(Data, HashMap<String, Double>) - Static method in class halo.data.Filter
Filters the data according to given values for bias correction in such a way that only those probeset ids are kept that have corresponding correction values
filterPQS(Data, Normalization, double, boolean) - Static method in class halo.data.Filter
Please note that this method can only be used after normalization!
filterPQS(Data, Normalization, int, boolean) - Static method in class halo.data.Filter
Please note that this method can only be used after normalization!
filterPQS(Data, Normalization, boolean) - Static method in class halo.data.Filter
Please note that this method can only be used after normalization!
findMiniMaxi() - Method in class halo.data.Data
Sets the new minimum and maximum
formatList(String[]) - Static method in class halo.userinterface.cmdline.CommandLine
Allows to print a String[] into a human readable format

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