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java.lang.Objectdata.Filter
public class Filter
Provides methods for filtering the values contained in a Data object
Constructor Summary | |
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Filter()
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Method Summary | |
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static Data |
filter(Data data,
double threshold)
removes all experiments where at least one of the values is beneath a certain threshold Commandline option -f threshold='value' |
static Data |
filterAbsent(Data data,
java.util.ArrayList<java.lang.String> label)
Removes values that are defined as 'absent' in the attribute list Commandline option present='label' |
static Data |
filterPQS(Data data,
LinearRegression l)
Filters data such that from each gene only one entry, the one with the lowest quality control value, is kept Commandline option pqs=min |
static Data |
filterPQS(Data data,
LinearRegression l,
double threshold)
Filters the data in such a way that all remaining entries have a quality control value lower than the given threshold Commandline option pqs='threshold' |
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public Filter()
Method Detail |
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public static Data filter(Data data, double threshold)
data
- Data object which shall be filteredthreshold
- Cutoff-thresholdpublic static Data filterAbsent(Data data, java.util.ArrayList<java.lang.String> label)
data
- Data object that will be filteredlabel
- Label name of the attribute containing the absence-information
public static Data filterPQS(Data data, LinearRegression l, double threshold)
data
- Data object that shall be filteredl
- Linear Regression object which correction factors will be used for filteringthreshold
- A threshold which defines which values shall be kept
public static Data filterPQS(Data data, LinearRegression l)
data
- Data object that shall be filteredl
- The linear regression object which will be used for the filtering
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