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Packages that use Normalization | |
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halo.data | Provides for the extraction, filtering, handling and saving of expression data. |
halo.normalization | Provides for the calculation and handling of normalization. |
halo.userinterface.cmdline | Provides for the handling of user input and starting of corresponding calculations. |
halo.userinterface.gui | Provides for the generation and handling of a graphical user interface, as well as the starting of corresponding calculations according to user input. |
halo.userinterface.gui.graphhandler | Provides for generation of plots and histograms. |
Uses of Normalization in halo.data |
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Methods in halo.data with parameters of type Normalization | |
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static Data |
Filter.filterPQS(Data data,
Normalization l,
boolean histogram)
Please note that this method can only be used after normalization! |
static Data |
Filter.filterPQS(Data data,
Normalization l,
double threshold,
boolean histogram)
Please note that this method can only be used after normalization! |
static Data |
Filter.filterPQS(Data data,
Normalization l,
int replicate,
boolean histogram)
Please note that this method can only be used after normalization! |
Uses of Normalization in halo.normalization |
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Subclasses of Normalization in halo.normalization | |
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class |
LinearRegression
Implementation of normalization method=linear regression based on simple linear regression Command line option: -l standard |
Uses of Normalization in halo.userinterface.cmdline |
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Methods in halo.userinterface.cmdline that return Normalization | |
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static Normalization |
CmdFilterData.performNormalization(Data data)
Performs normalization on a given Data object with the previously specified method |
Uses of Normalization in halo.userinterface.gui |
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Methods in halo.userinterface.gui that return Normalization | |
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Normalization |
GuiNormal.getNormalization()
Returns the normalization Object |
Methods in halo.userinterface.gui with parameters of type Normalization | |
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void |
GuiFilterData.setNorm(Normalization norm)
Sets the normalization object needed for evaluation |
Uses of Normalization in halo.userinterface.gui.graphhandler |
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Methods in halo.userinterface.gui.graphhandler with parameters of type Normalization | |
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static XYGraphConstructor |
GraphHandler.plotNormalization(Normalization norm,
Data data)
Generates the plot for normalization |
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