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endRScript()
- Method in class halo.data.biascorrection.
RMethods
End the writing of the R script
error(String, Component)
- Static method in class halo.userinterface.gui.guitools.
DisplayWarnings
Shows an error dialog
EU
- Static variable in class halo.userinterface.gui.
GuiHalfLife
evaluate(String, int, String, String, HashMap<String, Double>, boolean)
- Method in class halo.data.
Data
Method for the Uracil-based evaluation of the values: Compares (average) uracil number of the sequence to logarithm of the ratio.
evaluateFasta(String, String, HashMap<String, Double>, boolean)
- Method in class halo.userinterface.gui.
GuiFilterData
Starts the evaluation using the multiple fasta file
extractFlags(String[])
- Static method in class halo.userinterface.cmdline.
CmdFilterData
Takes the input options and sets all necessary variables accordingly
extractFlags(String[])
- Static method in class halo.userinterface.cmdline.
CmdNormalization
Translates the flags of the options array into values for the variables used for calculation
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