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halo.data.* |
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halo.data.Data | ||
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public static final int |
AVERAGEFIRST |
2 |
public static final java.lang.String |
GENEDEFAULT |
"gene_name" |
public static final java.lang.String |
LOGEN |
"log(e\'/n\')" |
public static final java.lang.String |
LOGEU |
"log(e\'/u\')" |
public static final java.lang.String |
LOGUN |
"log(u\'/n\')" |
public static final int |
RATIOFIRST |
1 |
public static final int |
REPLICATE |
3 |
halo.data.biascorrection.RCorrelationCoefficient | ||
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public static final java.lang.String |
KENDAL |
"kendal" |
public static final java.lang.String |
PEARSON |
"pearson" |
public static final java.lang.String |
SPEARMAN |
"spearman" |
halo.examples.* |
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halo.examples.SampleUseCase1 | ||
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public static final java.lang.String |
DATAFILE |
"data/Example_mouse.txt" |
public static final java.lang.String |
SEQUENCEFILE |
"data/sequences_mouse.txt" |
halo.examples.SampleUseCase3 | ||
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public static final java.lang.String |
PATHTOR |
"/home/proj/software/R/Unix/R-2.10.0/bin" |
halo.halflife.* |
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halo.halflife.HalfLife | ||
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public static final java.lang.String |
NEWLY |
"new" |
public static final java.lang.String |
NEWPRE |
"new/pre" |
public static final java.lang.String |
PRE |
"pre" |
halo.halflife.HalfLifeWriter | ||
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public static final int |
BOTH |
3 |
public static final int |
HALFLIFE |
1 |
public static final int |
RATIO |
2 |
halo.normalization.* |
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halo.normalization.Normalization | ||
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public static final int |
UNDEF |
-1 |
halo.tools.* |
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halo.tools.Tools | ||
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public static final java.lang.String |
HOMEPAGE |
"http://www.bio.ifi.lmu.de/software/HALO" |
public static final java.lang.String |
HOMEPAGEDOC |
"http://www.bio.ifi.lmu.de/files/Software/halo/doc/index.html" |
public static final java.lang.String |
LIBRARYNAME |
"HALO" |
public static final java.lang.String |
VERSION |
"1.3" |
halo.userinterface.* |
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halo.userinterface.cmdline.CmdHalfLife | ||
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public static final java.lang.String |
NEW |
"new" |
public static final java.lang.String |
NEWPRE |
"new/pre" |
public static final java.lang.String |
PRE |
"pre" |
halo.userinterface.cmdline.CmdNormalization | ||
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public static final java.lang.String |
STANDARD |
"standard" |
halo.userinterface.gui.Gui | ||
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public static final int |
UNDEF |
-1 |
halo.userinterface.gui.GuiFilterData | ||
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public static final java.lang.String |
PQS |
"pqs" |
public static final java.lang.String |
PQSMIN |
"pqsMin" |
public static final java.lang.String |
PRESENT |
"present" |
public static final java.lang.String |
THRESHOLD |
"threshold" |
halo.userinterface.gui.GuiHalfLife | ||
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public static final java.lang.String |
EU |
"new/pre" |
public static final java.lang.String |
NEW |
"new" |
public static final java.lang.String |
PRE |
"pre" |
halo.userinterface.gui.GuiNormal | ||
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public static final java.lang.String |
MEDIAN |
"median" |
public static final java.lang.String |
STANDARD |
"standard" |
halo.userinterface.gui.session.Session | ||
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public static final java.lang.String |
ALPHACELLDIV |
"alphaCellDiv" |
public static final java.lang.String |
ALPHACONSTANT |
"alphaConstant" |
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