A B C D E F G H I J K L M N P R S T U V W X

R

RATIO - Static variable in class halo.halflife.HalfLifeWriter
 
RATIOFIRST - Static variable in class halo.data.Data
 
ratioOfReplicate(double[][], double[][]) - Method in class halo.halflife.HalfLife
Calculates the ratio of a specific replicate
RCorrelationCoefficient - Class in halo.data.biascorrection
An implementation to calculate the correlation coefficient from a tabular data file with R
RCorrelationCoefficient(String, String) - Constructor for class halo.data.biascorrection.RCorrelationCoefficient
Constructs a new object for the calculation
readInData(File) - Method in class halo.userinterface.gui.graphhandler.XYGraphConstructor
Reads in data from a given file and prepares it for plotting Structure of the input file has to be tabular, with first column giving the x-axis value, other columns giving corresponding y-axis values
readInput(String, List<String>, List<String>, List<String>, List<String>, boolean) - Method in class halo.data.Data
Takes an input file, reads the values and saves them in the class variables of the Data object.
readRResults() - Method in class halo.data.biascorrection.RCorrelationCoefficient
Parse the result from the output file
readRResults() - Method in class halo.data.biascorrection.RLoessRegression
Reads the R output from the file and returns the fitted values
removeAllSpots(ArrayList<T>) - Method in class halo.data.Mapping
Removes all keys given in a list
removeAttribute(U) - Method in class halo.data.Mapping
Removes all entries corresponding to a specific attribute from the Mapping
removeSpot(T) - Method in class halo.data.Mapping
Removes a given key from the Mapping
REPLICATE - Static variable in class halo.data.Data
 
restrictRatio(double[][], int) - Method in class halo.data.Data
Restricts a multidimensional array onto an array with one dimension containing the wanted replicate, while keeping the order.
RLoessRegression - Class in halo.data.biascorrection
Performs a local approximating regression for a data file with R
RLoessRegression(String, String, String[]) - Constructor for class halo.data.biascorrection.RLoessRegression
Constructs a new object for local approaximating regression with R
RMethods - Class in halo.data.biascorrection
Class for the writing of R scripts and running these from the code
RMethods() - Constructor for class halo.data.biascorrection.RMethods
 
rPath - Static variable in class halo.userinterface.cmdline.CmdFilterData
 
run() - Static method in class halo.examples.SampleUseCase1
Starts the loading, filtering and printing of data
run() - Static method in class halo.examples.SampleUseCase2
Starts the calculation and plotting of half-lives
run() - Static method in class halo.examples.SampleUseCase3
Starts the evaluation process
run(String[]) - Static method in class halo.userinterface.cmdline.CommandLine
Run the program with the parameters given
runR() - Method in class halo.data.biascorrection.RMethods
Start R with the previously written script

A B C D E F G H I J K L M N P R S T U V W X