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RATIO
- Static variable in class halo.halflife.
HalfLifeWriter
RATIOFIRST
- Static variable in class halo.data.
Data
ratioOfReplicate(double[][], double[][])
- Method in class halo.halflife.
HalfLife
Calculates the ratio of a specific replicate
RCorrelationCoefficient
- Class in
halo.data.biascorrection
An implementation to calculate the correlation coefficient from a tabular data file with R
RCorrelationCoefficient(String, String)
- Constructor for class halo.data.biascorrection.
RCorrelationCoefficient
Constructs a new object for the calculation
readInData(File)
- Method in class halo.userinterface.gui.graphhandler.
XYGraphConstructor
Reads in data from a given file and prepares it for plotting Structure of the input file has to be tabular, with first column giving the x-axis value, other columns giving corresponding y-axis values
readInput(String, List<String>, List<String>, List<String>, List<String>, boolean)
- Method in class halo.data.
Data
Takes an input file, reads the values and saves them in the class variables of the Data object.
readRResults()
- Method in class halo.data.biascorrection.
RCorrelationCoefficient
Parse the result from the output file
readRResults()
- Method in class halo.data.biascorrection.
RLoessRegression
Reads the R output from the file and returns the fitted values
removeAllSpots(ArrayList<T>)
- Method in class halo.data.
Mapping
Removes all keys given in a list
removeAttribute(U)
- Method in class halo.data.
Mapping
Removes all entries corresponding to a specific attribute from the Mapping
removeSpot(T)
- Method in class halo.data.
Mapping
Removes a given key from the Mapping
REPLICATE
- Static variable in class halo.data.
Data
restrictRatio(double[][], int)
- Method in class halo.data.
Data
Restricts a multidimensional array onto an array with one dimension containing the wanted replicate, while keeping the order.
RLoessRegression
- Class in
halo.data.biascorrection
Performs a local approximating regression for a data file with R
RLoessRegression(String, String, String[])
- Constructor for class halo.data.biascorrection.
RLoessRegression
Constructs a new object for local approaximating regression with R
RMethods
- Class in
halo.data.biascorrection
Class for the writing of R scripts and running these from the code
RMethods()
- Constructor for class halo.data.biascorrection.
RMethods
rPath
- Static variable in class halo.userinterface.cmdline.
CmdFilterData
run()
- Static method in class halo.examples.
SampleUseCase1
Starts the loading, filtering and printing of data
run()
- Static method in class halo.examples.
SampleUseCase2
Starts the calculation and plotting of half-lives
run()
- Static method in class halo.examples.
SampleUseCase3
Starts the evaluation process
run(String[])
- Static method in class halo.userinterface.cmdline.
CommandLine
Run the program with the parameters given
runR()
- Method in class halo.data.biascorrection.
RMethods
Start R with the previously written script
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