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java.lang.Objectgui.GuiFilterData
public class GuiFilterData
'Interface' which connects GUI and loading/filtering methods for data
Field Summary | |
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static java.lang.String |
PQS
|
static java.lang.String |
PQSMIN
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static java.lang.String |
PRESENT
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static java.lang.String |
THRESHOLD
|
Constructor Summary | |
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GuiFilterData()
Constructor creating an object of GuiFilterData |
Method Summary | |
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void |
addAttr(java.io.File file)
|
void |
addAttributesList(java.util.ArrayList<Mapping<java.lang.String,java.lang.String>> list,
java.lang.String[] attrDescr)
|
void |
addFasta(java.io.File file,
int column)
|
void |
addMethod(java.lang.String method,
java.lang.String filterValue)
|
void |
evaluateFasta()
|
java.lang.String[] |
getAttrDescr()
|
java.util.ArrayList<Mapping<java.lang.String,java.lang.String>> |
getAttributesList()
|
double |
getAvgL()
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double |
getAvgU()
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int |
getColumn()
|
Data |
getData()
|
java.io.File |
getFasta()
|
java.util.List<java.lang.String> |
getMethods()
|
java.lang.String |
getPlotName()
|
int |
getSize()
|
boolean |
hasData()
Checks whether Data has been set |
boolean |
hasGeneNames()
|
boolean |
hasGenes()
|
void |
loadData()
Creates a Data object from previously set variables |
void |
prepareData()
Filters a previously loaded Data object according to the set methods |
void |
saveData()
Saves the Data object in a file |
void |
setAttributes(java.util.List<java.lang.String> attributes)
|
void |
setFasta(java.lang.String fasta,
int column)
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void |
setFile(java.io.File file)
|
void |
setLabelsNew(java.util.List<java.lang.String> lab)
|
void |
setLabelsPre(java.util.List<java.lang.String> lab)
|
void |
setLabelsTot(java.util.List<java.lang.String> lab)
|
void |
setLR(LinearRegression lr)
|
void |
setMethods(java.util.List<java.lang.String> methods)
|
void |
setNewOut(java.util.List<java.lang.String> lab)
|
void |
setOutput(java.io.File outputFile)
|
void |
setPQSName(java.lang.String pqs)
|
void |
setPreOut(java.util.List<java.lang.String> lab)
|
void |
setTotOut(java.util.List<java.lang.String> lab)
|
Methods inherited from class java.lang.Object |
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equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Field Detail |
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public static final java.lang.String THRESHOLD
public static final java.lang.String PRESENT
public static final java.lang.String PQSMIN
public static final java.lang.String PQS
Constructor Detail |
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public GuiFilterData()
Method Detail |
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public boolean hasData()
public boolean hasGenes()
public boolean hasGeneNames()
public void loadData()
public void prepareData()
public void addAttr(java.io.File file)
public void addAttributesList(java.util.ArrayList<Mapping<java.lang.String,java.lang.String>> list, java.lang.String[] attrDescr)
public void addFasta(java.io.File file, int column)
public void addMethod(java.lang.String method, java.lang.String filterValue)
public void evaluateFasta()
public void saveData()
public Data getData()
public java.io.File getFasta()
public int getColumn()
public int getSize()
public java.util.List<java.lang.String> getMethods()
public java.lang.String[] getAttrDescr()
public java.util.ArrayList<Mapping<java.lang.String,java.lang.String>> getAttributesList()
public void setFile(java.io.File file)
public void setLabelsNew(java.util.List<java.lang.String> lab)
public void setLabelsPre(java.util.List<java.lang.String> lab)
public void setLabelsTot(java.util.List<java.lang.String> lab)
public void setNewOut(java.util.List<java.lang.String> lab)
public void setPreOut(java.util.List<java.lang.String> lab)
public void setTotOut(java.util.List<java.lang.String> lab)
public void setAttributes(java.util.List<java.lang.String> attributes)
public void setMethods(java.util.List<java.lang.String> methods)
public void setFasta(java.lang.String fasta, int column)
public void setOutput(java.io.File outputFile)
public void setLR(LinearRegression lr)
public void setPQSName(java.lang.String pqs)
public double getAvgU()
public double getAvgL()
public java.lang.String getPlotName()
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