Uses of Class
halo.halflife.HalfLife

Packages that use HalfLife
halo.examples Provides easy-to-understand examples for the usage of HALO. 
halo.halflife Provides for the calculation and handling of half-lives. 
halo.userinterface.gui Provides for the generation and handling of a graphical user interface, as well as the starting of corresponding calculations according to user input. 
halo.userinterface.gui.graphhandler Provides for generation of plots and histograms. 
 

Uses of HalfLife in halo.examples
 

Methods in halo.examples that return types with arguments of type HalfLife
static java.util.List<HalfLife> SampleUseCase2.run()
          Starts the calculation and plotting of half-lives
 

Method parameters in halo.examples with type arguments of type HalfLife
static double SampleUseCase2.median(Data data, java.util.ArrayList<HalfLife> medMethods, double time)
          Calculates the median half-life for a set of methods and a given time
 

Uses of HalfLife in halo.halflife
 

Subclasses of HalfLife in halo.halflife
 class HalfLife_New
          Implementation of HalfLife providing methods for the usual calculation of half-life values for newly transcribed RNA, based on the ratio of newly transcribed to total RNA
 class HalfLife_NewPre
          Class that provides half-life calculation methods based on the ratio of newly transcribed (labeled) RNA to pre-existing (unlabeled)RNA
 class HalfLife_Pre
          Implementation of HalfLife providing methods for the usual calculation of half-life values for pre-existing RNA, based on the ratio of pre-existing to total RNA
 

Constructors in halo.halflife with parameters of type HalfLife
HalfLifeWriter(java.lang.String output, java.lang.String header, int which, HalfLife... hl)
          Writes the half-life values of a number of different HalfLife objects into a file, thereby giving the choice to eliminate lines that are not saturated
 

Uses of HalfLife in halo.userinterface.gui
 

Methods in halo.userinterface.gui that return types with arguments of type HalfLife
 java.util.List<HalfLife> GuiHalfLife.getHL()
          Returns the list of half-life objects calculated
 

Uses of HalfLife in halo.userinterface.gui.graphhandler
 

Method parameters in halo.userinterface.gui.graphhandler with type arguments of type HalfLife
static void GraphHandler.plotHalfLifeHisto(java.util.List<HalfLife> lives, java.util.List<java.lang.Double> time, java.awt.Frame gui)
          plots half-lives as histograms, each half-life calculation in one graph