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Packages that use HalfLife | |
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halo.examples | Provides easy-to-understand examples for the usage of HALO. |
halo.halflife | Provides for the calculation and handling of half-lives. |
halo.userinterface.gui | Provides for the generation and handling of a graphical user interface, as well as the starting of corresponding calculations according to user input. |
halo.userinterface.gui.graphhandler | Provides for generation of plots and histograms. |
Uses of HalfLife in halo.examples |
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Methods in halo.examples that return types with arguments of type HalfLife | |
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static java.util.List<HalfLife> |
SampleUseCase2.run()
Starts the calculation and plotting of half-lives |
Method parameters in halo.examples with type arguments of type HalfLife | |
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static double |
SampleUseCase2.median(Data data,
java.util.ArrayList<HalfLife> medMethods,
double time)
Calculates the median half-life for a set of methods and a given time |
Uses of HalfLife in halo.halflife |
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Subclasses of HalfLife in halo.halflife | |
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class |
HalfLife_New
Implementation of HalfLife providing methods for the usual calculation of half-life values for newly transcribed RNA, based on the ratio of newly transcribed to total RNA |
class |
HalfLife_NewPre
Class that provides half-life calculation methods based on the ratio of newly transcribed (labeled) RNA to pre-existing (unlabeled)RNA |
class |
HalfLife_Pre
Implementation of HalfLife providing methods for the usual calculation of half-life values for pre-existing RNA, based on the ratio of pre-existing to total RNA |
Constructors in halo.halflife with parameters of type HalfLife | |
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HalfLifeWriter(java.lang.String output,
java.lang.String header,
int which,
HalfLife... hl)
Writes the half-life values of a number of different HalfLife objects into a file, thereby giving the choice to eliminate lines that are not saturated |
Uses of HalfLife in halo.userinterface.gui |
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Methods in halo.userinterface.gui that return types with arguments of type HalfLife | |
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java.util.List<HalfLife> |
GuiHalfLife.getHL()
Returns the list of half-life objects calculated |
Uses of HalfLife in halo.userinterface.gui.graphhandler |
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Method parameters in halo.userinterface.gui.graphhandler with type arguments of type HalfLife | |
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static void |
GraphHandler.plotHalfLifeHisto(java.util.List<HalfLife> lives,
java.util.List<java.lang.Double> time,
java.awt.Frame gui)
plots half-lives as histograms, each half-life calculation in one graph |
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