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P

PATHTOR - Static variable in class halo.examples.SampleUseCase3
 
PEARSON - Static variable in class halo.data.biascorrection.RCorrelationCoefficient
 
performNormalization(Data) - Static method in class halo.userinterface.cmdline.CmdFilterData
Performs normalization on a given Data object with the previously specified method
plotHalfLifeHisto(List<HalfLife>, List<Double>, Frame) - Static method in class halo.userinterface.gui.graphhandler.GraphHandler
plots half-lives as histograms, each half-life calculation in one graph
plotNormalization(Normalization, Data) - Static method in class halo.userinterface.gui.graphhandler.GraphHandler
Generates the plot for normalization
PQS - Static variable in class halo.userinterface.gui.GuiFilterData
 
PQSMIN - Static variable in class halo.userinterface.gui.GuiFilterData
 
PRE - Static variable in class halo.halflife.HalfLife
 
PRE - Static variable in class halo.userinterface.cmdline.CmdHalfLife
 
PRE - Static variable in class halo.userinterface.gui.GuiHalfLife
 
prepareData(String[]) - Static method in class halo.userinterface.cmdline.CmdFilterData
Creates a data object from the information given as options array
prepareData() - Method in class halo.userinterface.gui.GuiFilterData
Filters a previously loaded Data object according to the set methods
prepareNormalization(Data) - Static method in class halo.userinterface.cmdline.CmdNormalization
Contains all the methods for calculation of normalization
PRESENT - Static variable in class halo.userinterface.gui.GuiFilterData
 
printHalfLivesWithAttributes(String, ArrayList<String>) - Method in class halo.halflife.HalfLife
Prints half-life values together with a given list of attributes into an output file
printHelp() - Static method in class halo.userinterface.cmdline.CommandLine
Print a detailed description of all available flags for cmdline interface onto the console
printMessage() - Method in exception halo.userinterface.cmdline.cmdexceptions.NoValueException
 
propertyChange(PropertyChangeEvent) - Method in class halo.userinterface.gui.guitools.LabelChooserDialog
Reacts to state changes in the panel.

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