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M

main(String[]) - Static method in class halo.examples.SampleUseCase1
 
main(String[]) - Static method in class halo.examples.SampleUseCase2
 
main(String[]) - Static method in class halo.examples.SampleUseCase3
 
main(String[]) - Static method in class halo.userinterface.cmdline.CmdFilterData
Main method which calls all necessary methods to get from a given options array to a finished output file
main(String[]) - Static method in class halo.userinterface.cmdline.CmdHalfLife
Main method which takes an options array as input and starts all necessary calculations for half-lives Prints the results into a file, if '-corr TRUE' also provides correction factors based on median
main(String[]) - Static method in class halo.userinterface.cmdline.CmdNormalization
Contains all necessary methods to calculate normalization from an options array
main(String[]) - Static method in class halo.userinterface.cmdline.CommandLine
Main method which is called upon starting the command line input
main(String[]) - Static method in class halo.userinterface.gui.Gui
Starting the application
main(String[]) - Static method in class halo.userinterface.gui.guitools.AboutDialog
 
Mapping<T,U> - Class in halo.data
Mapping of spotIDs to corresponding indices of RNA sets
Mapping() - Constructor for class halo.data.Mapping
Constructor to initialize the Mapping
mapSize() - Method in class halo.data.Mapping
Returns the size of the Mapping (=number of entries)
median(Data, ArrayList<HalfLife>, double) - Static method in class halo.examples.SampleUseCase2
Calculates the median half-life for a set of methods and a given time
median(double[]) - Static method in class halo.halflife.HalfLife
Calculation of the median of a single dimensional array
MEDIAN - Static variable in class halo.userinterface.gui.GuiNormal
 

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