Command line tools - Normalization

HALO provides methods for the normalization of your data. Simply add the necessary flag described below to your data loading call, and the data will be normalized and can be used for subsequent analyses.

List of necessary flags

-l method Method for normalization; at the moment only the 'standard' method for linear regression is implemented

List of optional flags

-median numerical Time for the calculation of the median, based on correction factors calculated with Normalization and on data.

Example call


-i data.txt -ct totalRNA2 -cp preexistingRNA2 -cn newlytranscribed_HumanExon2 -l standard

HALO documentation