HALO
Java API
This section provides an overview over the Java library and API of
HALO. You can use all methods implemented for HALO by embedding
the HALO JAR file in the classpath and accessing the respective classes.
A detailed documentation of all
classes and methods can be found in the JavaDocs
of HALO. This section serves as an introduction to the main functionality and
provides a collection of well-documented sample use cases
for a step-by-step guide through most of the functionality in the
library.
Classpath
If you want to use the HALO classes in your project, you have to embed
the halo-X.Y.jar file (where X.Y
is the current version) delivered with the download package in your Java
classpath. This package provides all methods of the HALO framework. Also provided is the
JFreeChart library
(jfreechart-1.0.13.jar), which is necessary for graphs and plots.
Library overview
Contains a brief overview of the HALO Java package structure. Show overview
Use cases
Source code examples for different applications of the HALO framework. Show use cases
Extensibility
Note that you can integrate your own implementations of normalization and half-life calculation methods.
Additionally you can include your own filtering methods or alpha functions. See also: