References

Here you can find all published work used for HALO in alphabetical order:

[1]	J.A. Bernstein et al. Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99(15), 9697-9702, 2002. [ PubMed ]
[2]	C. Blattner et al. UV-Induced stabilization of c-fos and other short-lived mRNAs. Mol Cell Biol 20(10), 3616-3625, 2000. [ PubMed ]
[3]	L. Dölken et al. High-resolution gene expression profiling for simultaneous kinetic parameter analysis of RNA synthesis and decay. RNA 14(9), 1959-1972, 2008. [ PubMed ]
[4]	C.C. Friedel and L. Dölken. Metabolic tagging and purification of nascent rna: Implications for transcriptomics. Mol Biosyst 5(11), 1271-1278, 2009. [ Pubmed ]
[5]	C.C. Friedel et al. Conserved principles of mammalian transcriptional regulation revealed by RNA half-life. Nucleic Acids Res. 37(17), e115, 2009. [ Pubmed ]
[6]	C.C. Friedel, S. Kaufmann, L. Dölken and R. Zimmer. HALO - A Java framework for precise transcript half-life determination. Bioinformatics. submitted.
[7]	M. Gorospe, X. Wang and N.J. Holbrook. p53-dependent elevation of p21Waf1 expression by UV light is mediated through mRNA stabilization and involves a vanadate-sensitive regulatory system. Mol Cell Biol 18(3), 1400-1407, 1998. [ PubMed ]
[8]	M. Kenzelmann et al. Microarray analysis of newly synthesized RNA in cells and animal. Proc Natl Acad Sci U S A 104(15), 6164-6169, 2007. [ PubMed ]
[9]	Miller, M. R. et al. TU-tagging: cell type-specific RNA isolation from intact complex tissues. Nat Methods6, 439-441, 2009. [ PubMed ]
[10]	R. Narsai et al. Genome-wide analysis of mRNA decay rates and their determinants in Arabidopsis thaliana. Plant Cell 19(11), 3418-3436, 2007. [ PubMed ]
[11]	A. Raghavan et al. Genome-wide analysis of mRNA decay in resting and activated primary human T lymphocytes. Nucleic Acids Res 30(24), 5529-5538, 2002. [ PubMed ]
[12]	J. Ross. mRNA stability in mammalian cells. Microbiol Rev 59(3), 423-450, 1995. [ PubMed ]
[13]	Yang et al. Decay rates of human mRNAs: correlation with functional characteristics and sequence attributes. Genome Res 13(8), 1863-1872, 2003. [ PubMed ]