|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use ScoresCalculator | |
---|---|
procope.data.networks | |
procope.evaluation.complexquality.go | |
procope.examples | |
procope.methods.scores | |
procope.tools.userclasses |
Uses of ScoresCalculator in procope.data.networks |
---|
Methods in procope.data.networks with parameters of type ScoresCalculator | |
---|---|
static ProteinNetwork |
NetworkGenerator.generateNetwork(ScoresCalculator calculator)
Generate a network from a given scores calculator . |
static ProteinNetwork |
NetworkGenerator.generateNetwork(ScoresCalculator calculator,
float cutOff)
Generate a network from a given scores calculator . |
Uses of ScoresCalculator in procope.evaluation.complexquality.go |
---|
Subclasses of ScoresCalculator in procope.evaluation.complexquality.go | |
---|---|
class |
FunctionalSimilarities
This class is extended by classes which calculate a semantic similarity score of two given proteins based on GO information. |
class |
FunctionalSimilaritiesSchlicker
Implements the calculation of functional similarites between proteins as described in |
Uses of ScoresCalculator in procope.examples |
---|
Subclasses of ScoresCalculator in procope.examples | |
---|---|
class |
DummyScores
|
Uses of ScoresCalculator in procope.methods.scores |
---|
Subclasses of ScoresCalculator in procope.methods.scores | |
---|---|
class |
DiceCoefficients
Provides an efficient implementation of "Dice coefficients", a protein protein affinity measure derived from purification datasets according to |
class |
HartCalculator
Calculates protein-protein interaction scores from purification data according to |
class |
PECalculator
Calculates Purification Enrichment scores according to |
class |
SocioAffinityCalculator
Calculates socio affinity scores according to |
Methods in procope.methods.scores with parameters of type ScoresCalculator | |
---|---|
static float |
ComplexScoreCalculator.averageComplexScore(ScoresCalculator scoreCalc,
Complex complex)
Calculates the score of a complex using a given scores calculator. |
static float |
ComplexScoreCalculator.averageComplexScore(ScoresCalculator scoreCalc,
Complex complex,
boolean ignoreMissingScores)
Calculates the score of a complex using a given scores calculator. |
static float |
ComplexScoreCalculator.averageComplexSetScore(ScoresCalculator scoreCalc,
ComplexSet complexSet,
boolean weighted)
Calculates the average complex score of a given complex set. |
static float |
ComplexScoreCalculator.averageComplexSetScore(ScoresCalculator scoreCalc,
ComplexSet complexSet,
boolean weighted,
boolean ignoreMissingScores)
Calculates the average complex score of a given complex set. |
Uses of ScoresCalculator in procope.tools.userclasses |
---|
Methods in procope.tools.userclasses that return ScoresCalculator | |
---|---|
ScoresCalculator |
UserScoresCalculator.generateScoresCalculator(PurificationData[] data,
Object... additionalParameters)
Generates the actual ScoresCalculator object for this user scores
calculator. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |