Uses of Package
procope.tools

Packages that use procope.tools
procope.data.complexes   
procope.data.networks   
procope.data.petrinets   
procope.examples   
procope.methods.interologs   
procope.methods.interologs.blast   
procope.tools   
procope.tools.namemapping   
 

Classes in procope.tools used by procope.data.complexes
ProCopeException
          This exception is thrown by various methods of this library.
 

Classes in procope.tools used by procope.data.networks
BooleanExpression
          Used to evaluate boolean expressions.
ProCopeException
          This exception is thrown by various methods of this library.
 

Classes in procope.tools used by procope.data.petrinets
ProCopeException
          This exception is thrown by various methods of this library.
 

Classes in procope.tools used by procope.examples
InvalidExpressionException
          Thrown by BooleanExpression.BooleanExpression(String) if the specified expression could not be parsed.
 

Classes in procope.tools used by procope.methods.interologs
SequenceAligner
          Calculates pairwise sequence alignments using the JAligner library.
 

Classes in procope.tools used by procope.methods.interologs.blast
ProCopeException
          This exception is thrown by various methods of this library.
 

Classes in procope.tools used by procope.tools
InvalidExpressionException
          Thrown by BooleanExpression.BooleanExpression(String) if the specified expression could not be parsed.
ProCopeException
          This exception is thrown by various methods of this library.
 

Classes in procope.tools used by procope.tools.namemapping
BooleanExpression
          Used to evaluate boolean expressions.
ProCopeException
          This exception is thrown by various methods of this library.