methods.scores.go
Interface FunctionalSimilarities

All Superinterfaces:
ProteinSet, ScoresCalculator
All Known Implementing Classes:
FunctionalSimilaritiesSchlicker

public interface FunctionalSimilarities
extends ScoresCalculator

This interface is implemented by classes which calculate a semantic similarity score of two given proteins based on GO information.

This class is basically just a wrapper of the ScoresCalculator

Author:
Jan Krumsiek

Method Summary
 float getScore(int protein1, int protein2)
          Calculates the semantic similarity score of two given proteins.
 
Methods inherited from interface methods.scores.ScoresCalculator
getProteins
 

Method Detail

getScore

float getScore(int protein1,
               int protein2)
Calculates the semantic similarity score of two given proteins.

Specified by:
getScore in interface ScoresCalculator
Parameters:
protein1 - first protein
protein2 - second protein
Returns:
interaction score of the two proteins