|
||||||||||
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES |
Interface Summary | |
---|---|
FunctionalSimilarities | This interface is implemented by classes which calculate a semantic similarity score of two given proteins based on GO information. |
TermSimilarities | This interface must be implemented by classes which calculate a semantic similarity of two GO terms. |
Class Summary | |
---|---|
CommonAncestors | Calculates and holds common ancestors for a given GO network. |
FunctionalSimilaritiesSchlicker | Implements the calculation of functional similarites between proteins as described in Schlicker, A.; Domingues, F. |
GOAnnotationReader | Contains static methods to read annotations from a GO annotations file. |
GOAnnotations | Represents a set of gene-product to GO-term annotations which are normally read from a file. |
GONetwork | Represents the ontology network of one GO namespace. |
GOTerm | Represents a single GO term in an ontology network. |
TermSimilaritiesSchlicker | Implements the calculation of similarities between two GO terms as described in Schlicker, A.; Domingues, F. |
Enum Summary | |
---|---|
FunctionalSimilaritiesSchlicker.FunctionalSimilarityMeasure | Functional semilarity measure. |
GONetwork.Namespace | The GO namespaces. |
GONetwork.Relationships | GO ontology relationships which can be followed while constructing the ontology network. |
TermSimilaritiesSchlicker.TermSimilarityMeasure | The similarity to be used. |
|
||||||||||
PREV PACKAGE NEXT PACKAGE | FRAMES NO FRAMES |