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Packages that use BlastHit | |
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methods.interologs.blast |
Uses of BlastHit in methods.interologs.blast |
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Methods in methods.interologs.blast that return BlastHit | |
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BlastHit |
BlastHits.getHit(int query,
int hit)
Retrieves a specific BLAST hit from the result. |
Methods in methods.interologs.blast that return types with arguments of type BlastHit | |
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Collection<BlastHit> |
BlastHits.getBestHits(Integer queryID)
Returns all best hits for a given query. |
Collection<BlastHit> |
BlastHits.getHitsPerQuery(int queryID)
Returns all hits for a given query protein |
Iterator<BlastHit> |
BlastHits.iterator()
Returns an iterator over all BLAST hits contained in this set |
Methods in methods.interologs.blast with parameters of type BlastHit | |
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boolean |
BlastBBHConstraints.acceptBBH(int protein1,
int protein2,
BlastHit forwardHit,
BlastHit backwardHit)
Function which is called by the BBH calculator to ask whether a given BBH is accepted or not. |
boolean |
BlastBBHAlignmentLengthConstraint.acceptBBH(int protein1,
int protein2,
BlastHit forwardHit,
BlastHit backwardHit)
Accepts a BBH if the give minimum fraction of both protein sequences is covered by the BLAST alignment. |
int |
BlastHit.compareTo(BlastHit o)
Orders the hits by their hit ID. |
Constructor parameters in methods.interologs.blast with type arguments of type BlastHit | |
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BlastHits(Collection<BlastHit> hits)
Creates a new BLAST hits object from a given list of hits . |
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