Library overview


This page contains an overview over the package structure of the ProCope library.

procope.data
Contains the implementations of complex sets, purification data, interaction networks and Petri nets along with their manipulation and file system methods.

procope.evaluation
This package contains classes which implement quality assessment methods for complex sets and protein interaction networks using experimental datasets.

procope.examples
Contains implementations for the examples in this Java API documentation.

procope.methods
Here all impementations for the score calculation and clustering algorithms can be found.

procope.tools
Contains helper classes, the ProteinManager and classes needed for the integration of user-defined clusterers and score calculators.

procope.userinterface
Implementations of the command line tools and the graphical user interface. These classes are not documented in this manual.





ProCope documentation