Package data

Interface Summary
ProteinSet This interface is implemented by classes which work on or contain a distinct set of proteins which are represented by internal IDs (see also: ProteinManager).
 

Class Summary
FASTAParser Reads sequences in (multi-)FASTA format.
LocalizationData A set of cellular localization information for proteins.
LocalizationDataReader Reads localization data from a file or stream.
Sequences A set of sequences internally represented by a internal_id=>sequence mapping.
StringToIntMapper Maps strings to integers.
XGMMLWriter Writes nodes and edges of any network to XGMML format.