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Interface Summary | |
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BlastBBHConstraints | Interface which is implemented by classes which define constraints for the calculation of BBHs from BLAST hits. |
Class Summary | |
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BlastBBHAlignmentLengthConstraint | Ensures that BBHs are only accepted if their BLAST alignment covers a minimum fraction of both aligned protein sequences. |
BlastHit | A single BLAST hit. |
BlastHitFileParser | Contains static methods to parse hits from a BLAST hit file. |
BlastHits | Represents an immutable list of BLAST hits which are normally parsed from a BLAST result file. |
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