Package tools

Class Summary
BooleanExpression Used to evaluate boolean expressions.
SequenceAligner Calculates pairwise sequence alignments using the JAligner library.
SparseMatrixInt Implementation of a matrix (2-dimensional array) of integers.
Tools Contains helper methods used throughout the whole library.
 

Exception Summary
InvalidExpressionException Thrown by BooleanExpression.BooleanExpression(String) if the specified expression could not be parsed.
ProCopeException This exception is thrown by various methods of this library.