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java.lang.Objectprocope.methods.scores.ScoresCalculator
procope.methods.scores.DiceCoefficients
public class DiceCoefficients
Provides an efficient implementation of "Dice coefficients", a protein protein affinity measure derived from purification datasets according to
Zhang et al.
From pull-down data to protein interaction networks and complexes with
biological relevance.
Bioinformatics, 2008, 24, 979-986
Constructor Summary | |
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DiceCoefficients(PurificationData data)
Creates a new Dice coefficients calculator |
Method Summary | |
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Set<Integer> |
getProteins()
Returns the proteins involved in the purification data set for this Dice coefficients calculator |
float |
getScore(int protein1,
int protein2)
Returns the Dice coefficient for two given proteins, returns 0 if the protein indices are out of range or if protein1==protein2 |
Methods inherited from class procope.methods.scores.ScoresCalculator |
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getScore |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public DiceCoefficients(PurificationData data)
data
- purification dataset to be usedMethod Detail |
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public Set<Integer> getProteins()
getProteins
in interface ProteinSet
getProteins
in class ScoresCalculator
public float getScore(int protein1, int protein2)
getScore
in class ScoresCalculator
protein1
- first proteinprotein2
- second protein
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