Class Summary |
AlignmentInterologScorer |
Implements interolog scoring using similarity or identity from pairwise
sequence alignments of the homologs. |
EvalueInterologScorer |
Implements interolog scoring using the geometric mean of the two BLAST
evalues involved in a transferred protein interaction (when transferred
using bidirectional best hits from BLAST). |
FASTAParser |
Reads sequences in (multi-)FASTA format. |
InterologsCalculator |
Calculates interologs from a given set of binary interactions and a
(homology) mapping between proteins. |
Sequences |
A set of sequences internally represented by a internal_id=>sequence
mapping. |