Class Summary |
CommonAncestors |
Calculates and holds common ancestors for a given GO network. |
FunctionalSimilarities |
This class is extended by classes which calculate a semantic
similarity score of two given proteins based on GO information. |
FunctionalSimilaritiesSchlicker |
Implements the calculation of functional similarites between proteins as
described in |
GOAnnotationReader |
Contains static methods to read annotations from a GO annotations file. |
GOAnnotations |
Represents a set of gene-product to GO-term annotations which are normally
read from a file. |
GONetwork |
Represents the ontology network of one GO namespace. |
GOTerm |
Represents a single GO term in an ontology network. |
TermSimilaritiesSchlicker |
Implements the calculation of similarities between two GO terms as described in |