complexcompare
Compares given sets of complex sets with each other using the Brohee
measure and checks for complexes that can be mapped.
Call the tool without any command line arguments to get detailed information about the parameters for this program.
See also:
Note: You can provide and arbitrary number of complex sets, an
all-against-all comparison will be performed. If you seperated two
complex set files by a comma instead of a whitespace, these complex
sets will be grouped.
Grouped complex sets are not compared to each other.
Output
The program outputs the result of each comparison to the standard output or in HTML format.
Sn^-1
, PPV^-1
and Acc^-1
of the Brohee comparison denote a comparison in the backward direction with the first complex set used as the reference set.
Example calls
- Compare a set of predicted clusters with the MIPS reference complex set
cmdline.sh complexcompare data/complexes/BT_217.txt data/complexes/mips_complexes.txt
- Compare two sets of predicted clusters with the MIPS and Aloy
reference complex sets, do not compare clusterings with clustering or
reference sets with reference sets (comma-separated parameters)
- produce HTML output and save it to a file
cmdline.sh complexcompare
data/complexes/BT_217.txt,data/complexes/hart_complexes.txt
data/complexes/mips_complexes.txt,data/complexes/aloy_complexes.txt
-html > output.html