|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |
java.lang.Objectprocope.evaluation.complexquality.go.GOAnnotationReader
public class GOAnnotationReader
Contains static methods to read annotations from a GO annotations file.
This class is not instantiatable.
GOAnnotations
Method Summary | |
---|---|
static GOAnnotations |
readAnnotations(File annotationFile)
Reads annotations from a given annotations file. |
static GOAnnotations |
readAnnotations(File annotationFile,
int useColumn)
Reads annotations from a given annotations file. |
static GOAnnotations |
readAnnotations(InputStream annotation)
Reads annotations from a given input stream. |
static GOAnnotations |
readAnnotations(InputStream annotations,
int useColumn)
Reads annotations from a given input stream. |
static GOAnnotations |
readAnnotations(String annotationFile)
Reads annotations from a given annotations file. |
static GOAnnotations |
readAnnotations(String annotationFile,
int useColumn)
Reads annotations from a given annotations file. |
Methods inherited from class java.lang.Object |
---|
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Method Detail |
---|
public static GOAnnotations readAnnotations(String annotationFile) throws IOException
annotationFile
- annotations file to be read
IOException
- if the file could not be readpublic static GOAnnotations readAnnotations(String annotationFile, int useColumn) throws IOException
annotationFile
- annotations file to be readuseColumn
- read protein identifiers from this column, you might
want to use regular expressions
IOException
- if the file could not be readpublic static GOAnnotations readAnnotations(File annotationFile) throws IOException
annotationFile
- annotations file to be read
IOException
- if the file could not be readpublic static GOAnnotations readAnnotations(File annotationFile, int useColumn) throws IOException
annotationFile
- annotations file to be readuseColumn
- read protein identifiers from this column, you might
want to use regular expressions
IOException
- if the file could not be readpublic static GOAnnotations readAnnotations(InputStream annotation)
annotation
- input stream from which the annotation data will be read
public static GOAnnotations readAnnotations(InputStream annotations, int useColumn)
annotations
- input stream from which the annotation data will be readuseColumn
- read protein identifiers from this column, you might
want to use regular expressions
|
||||||||||
PREV CLASS NEXT CLASS | FRAMES NO FRAMES | |||||||||
SUMMARY: NESTED | FIELD | CONSTR | METHOD | DETAIL: FIELD | CONSTR | METHOD |