btfinisher
Merges the results produced by clustering
in the bootstrap scores
calculation process. Determines the best overall Markov clustering
inflation coefficient, extracts the optimal clusterings which were
produced by this coefficient and finally calculates the bootstrap
network. This program also calculates and adds shared proteins to the
final clustering.
See also: Score network
generation
Example call
This example uses the result produced by clustering all bootstrap samples from the examples before (see: btsampler
, btclusterer
).
- use clusterings from the previous examples (
-prefix btresults/bt_
)
- output the final bootstrap complexes to a file (
-clust
)
- output the bootstrap network to a file (
-net
)
cmdline.sh btfinisher -prefix btresults/bt_ -clust bootstrap_complexes.txt -net bootstrap_network.txt