generatescores

Creates PPI score networks using a given score method. Note that boostrap scores cannot be calculated with this tool as several consequtive steps are required for that method.

Call the tool without any command line arguments to get detailed information about the parameters for this program.

See also:

Example calls

cmdline.sh generatescores -p data/purifications/gavin_raw.txt -score socio -c 5.0 -o socios.net

cmdline.sh generatescores -p data/purifications/gavin_raw.txt -score pe -peR 0.62 -peP 10 -c 5.0 -o PEs.net.gz -oz


ProCope documentation