Uses of Package
tools

Packages that use tools
data.complexes   
data.networks   
data.petrinets   
methods.interologs   
methods.interologs.blast   
tools   
tools.namemapping   
 

Classes in tools used by data.complexes
ProCopeException
          This exception is thrown by various methods of this library.
 

Classes in tools used by data.networks
BooleanExpression
          Used to evaluate boolean expressions.
ProCopeException
          This exception is thrown by various methods of this library.
 

Classes in tools used by data.petrinets
ProCopeException
          This exception is thrown by various methods of this library.
 

Classes in tools used by methods.interologs
SequenceAligner
          Calculates pairwise sequence alignments using the JAligner library.
 

Classes in tools used by methods.interologs.blast
ProCopeException
          This exception is thrown by various methods of this library.
 

Classes in tools used by tools
InvalidExpressionException
          Thrown by BooleanExpression.BooleanExpression(String) if the specified expression could not be parsed.
ProCopeException
          This exception is thrown by various methods of this library.
 

Classes in tools used by tools.namemapping
BooleanExpression
          Used to evaluate boolean expressions.
ProCopeException
          This exception is thrown by various methods of this library.