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java.lang.Objectprocope.methods.clustering.MCLParameters
public class MCLParameters
Represents a set of parameters for MCL clustering
.
The inflation coefficient is the most important parameter and affects the granularity of the clustering. For a more detailed description of all parameters consult the MCL manual at http://micans.org/mcl/
Constructor Summary | |
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MCLParameters()
Creates a set of MCL parameters with default settings. |
Method Summary | |
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protected String |
getCommandLineParameters()
Assemble command line parameters, directly used in command call |
void |
setInflation(float i)
Set the inflation coefficient |
void |
setP(float p)
Set the pruning number |
void |
setPct(float pct)
Set mass percentage below which to apply recovery |
void |
setR(float r)
Set the recover number |
void |
setS(float s)
Set the selection number |
void |
setScheme(int scheme)
Sets a scheme for the parameters p,s,r and pct. |
void |
setTimeout(int timeoutSeconds)
Set the timeout (in seconds) after which the mcl call will be terminated. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public MCLParameters()
setTimeout(int)
)
Method Detail |
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public void setInflation(float i)
i
- inflation coefficientpublic void setP(float p)
p
- pruning numberpublic void setS(float s)
s
- selection numberpublic void setR(float r)
r
- recover numberpublic void setPct(float pct)
pct
- mass percentagepublic void setTimeout(int timeoutSeconds)
timeoutSeconds
- public void setScheme(int scheme)
scheme
- scheme to be usedprotected String getCommandLineParameters()
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