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Packages that use InterologScorer | |
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methods.interologs |
Uses of InterologScorer in methods.interologs |
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Classes in methods.interologs that implement InterologScorer | |
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class |
AlignmentInterologScorer
Implements interolog scoring using similarity or identity from pairwise sequence alignments of the homologs. |
class |
EvalueInterologScorer
Implements interolog scoring using the geometric mean of the two BLAST evalues involved in a transferred protein interaction (when transferred using bidirectional best hits from BLAST). |
Methods in methods.interologs with parameters of type InterologScorer | |
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static ProteinNetwork |
InterologsCalculator.calculateInterologs(ProteinNetwork toTransfer,
ProteinNetwork mapping,
InterologScorer scorer)
Calculates interologs of an interaction network using a given protein mapping (which should contain homology information like bidirectional best hits). |
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