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java.lang.Objectprocope.methods.scores.ScoresCalculator
procope.methods.scores.PECalculator
public class PECalculator
Calculates Purification Enrichment scores according to
Collins et al.
Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae.
Mol Cell Proteomics, 2007, 6, 439-450
For more information about this scoring method please check out the online manual.
Constructor Summary | |
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PECalculator(PurificationData data,
float r,
float pseudocount)
Creates a new Purification Enrichment calculator. |
Method Summary | |
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Set<Integer> |
getProteins()
Returns all proteins of the purification data set used in this scores calculator |
float |
getScore(int protA,
int protB)
Calculates the Purification Enrichment score for two given proteins. |
Methods inherited from class procope.methods.scores.ScoresCalculator |
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getScore |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public PECalculator(PurificationData data, float r, float pseudocount)
data
- purification data to be usedr
- r parameter (see original literature)pseudocount
- pseudo-count (see original literature)Method Detail |
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public float getScore(int protA, int protB)
getScore
in class ScoresCalculator
protA
- first proteinprotB
- second protein
public Set<Integer> getProteins()
getProteins
in interface ProteinSet
getProteins
in class ScoresCalculator
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