complexscores

Calculates scores of complexes using a given scores network. A complex score is the average edge score of all inner-complex protein interactions. Thus to calculate a complex score n*(n-1)/2 values are averaged where missing edges get an implicit weight of 0.

Call the tool without any command line arguments to get detailed information about the parameters for this program.

See also:

Example calls

cmdline.sh complexscores -i data/complexes/mips_complexes.txt -net data/scores/bootstrap_combined.txt.gz

./cmdline.sh complexscores -i data/complexes/mips_complexes.txt -net data/scores/bootstrap_combined.txt.gz -avg -weighted


ProCope documentation