Uses of Class
methods.scores.go.GOAnnotations

Packages that use GOAnnotations
methods.scores.go   
 

Uses of GOAnnotations in methods.scores.go
 

Methods in methods.scores.go that return GOAnnotations
static GOAnnotations GOAnnotationReader.readAnnotations(File annotationFile)
          Reads annotations from a given annotations file.
static GOAnnotations GOAnnotationReader.readAnnotations(File annotationFile, int useColumn)
          Reads annotations from a given annotations file.
static GOAnnotations GOAnnotationReader.readAnnotations(InputStream annotation)
          Reads annotations from a given input stream.
static GOAnnotations GOAnnotationReader.readAnnotations(InputStream annotations, int useColumn)
          Reads annotations from a given input stream.
static GOAnnotations GOAnnotationReader.readAnnotations(String annotationFile)
          Reads annotations from a given annotations file.
static GOAnnotations GOAnnotationReader.readAnnotations(String annotationFile, int useColumn)
          Reads annotations from a given annotations file.
 

Constructors in methods.scores.go with parameters of type GOAnnotations
FunctionalSimilaritiesSchlicker(GONetwork gonet, GOAnnotations annotations, TermSimilarities termSim, FunctionalSimilaritiesSchlicker.FunctionalSimilarityMeasure funSim)
          Creates a new functional similarity score calculator.
TermSimilaritiesSchlicker(GONetwork gonet, GOAnnotations annotations, TermSimilaritiesSchlicker.TermSimilarityMeasure similarityMeasure, boolean caching)
          Creates a new term similarity calculator.