|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use Sequences | |
---|---|
data | |
methods.interologs.blast | |
tools |
Uses of Sequences in data |
---|
Methods in data that return Sequences | |
---|---|
static Sequences |
FASTAParser.loadSequences(InputStream input)
Loads sequences from a given InputStream, requires multi-FASTA format data |
static Sequences |
FASTAParser.loadSequences(InputStream input,
String organism)
Loads sequences from a given InputStream, requires multi-FASTA format data |
static Sequences |
FASTAParser.loadSequences(String file)
Loads sequences from a given multi-FASTA file |
static Sequences |
FASTAParser.loadSequences(String file,
String organism)
Loads sequences from a given multi-FASTA file |
Methods in data with parameters of type Sequences | |
---|---|
void |
Sequences.addAll(Sequences toAdd)
Adds all sequences of another Sequences object to this set. |
Uses of Sequences in methods.interologs.blast |
---|
Constructors in methods.interologs.blast with parameters of type Sequences | |
---|---|
BlastBBHAlignmentLengthConstraint(Sequences sequencePool,
float minAlign)
Create new alignment length object. |
Uses of Sequences in tools |
---|
Methods in tools that return Sequences | |
---|---|
Sequences |
SequenceAligner.getSequencePool()
|
Methods in tools with parameters of type Sequences | |
---|---|
void |
SequenceAligner.addToSequencePool(Sequences sequences)
Add a set of sequences to the sequence pool of this aligner. |
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |