procope.methods.interologs
Enum AlignmentInterologScorer.AlignmentScoring

java.lang.Object
  extended by java.lang.Enum<AlignmentInterologScorer.AlignmentScoring>
      extended by procope.methods.interologs.AlignmentInterologScorer.AlignmentScoring
All Implemented Interfaces:
Serializable, Comparable<AlignmentInterologScorer.AlignmentScoring>
Enclosing class:
AlignmentInterologScorer

public static enum AlignmentInterologScorer.AlignmentScoring
extends Enum<AlignmentInterologScorer.AlignmentScoring>

Defines the alignment measure which will be used


Enum Constant Summary
USE_IDENTITY
          Use sfrom the generated docs thequence identity from the alignment
USE_SIMILARITY
          Use sequence similarity from the alignment
 
Method Summary
static AlignmentInterologScorer.AlignmentScoring valueOf(String name)
          Returns the enum constant of this type with the specified name.
static AlignmentInterologScorer.AlignmentScoring[] values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 
Methods inherited from class java.lang.Enum
clone, compareTo, equals, finalize, getDeclaringClass, hashCode, name, ordinal, toString, valueOf
 
Methods inherited from class java.lang.Object
getClass, notify, notifyAll, wait, wait, wait
 

Enum Constant Detail

USE_IDENTITY

public static final AlignmentInterologScorer.AlignmentScoring USE_IDENTITY
Use sfrom the generated docs thequence identity from the alignment


USE_SIMILARITY

public static final AlignmentInterologScorer.AlignmentScoring USE_SIMILARITY
Use sequence similarity from the alignment

Method Detail

values

public static AlignmentInterologScorer.AlignmentScoring[] values()
Returns an array containing the constants of this enum type, in the order they are declared. This method may be used to iterate over the constants as follows:
for (AlignmentInterologScorer.AlignmentScoring c : AlignmentInterologScorer.AlignmentScoring.values())
    System.out.println(c);

Returns:
an array containing the constants of this enum type, in the order they are declared

valueOf

public static AlignmentInterologScorer.AlignmentScoring valueOf(String name)
Returns the enum constant of this type with the specified name. The string must match exactly an identifier used to declare an enum constant in this type. (Extraneous whitespace characters are not permitted.)

Parameters:
name - the name of the enum constant to be returned.
Returns:
the enum constant with the specified name
Throws:
IllegalArgumentException - if this enum type has no constant with the specified name
NullPointerException - if the argument is null