|
||||||||||
PREV NEXT | FRAMES NO FRAMES |
Packages that use ScoresCalculator | |
---|---|
data.networks | |
methods.scores | |
methods.scores.go | |
userinterface.gui |
Uses of ScoresCalculator in data.networks |
---|
Methods in data.networks with parameters of type ScoresCalculator | |
---|---|
static ProteinNetwork |
NetworkGenerator.generateNetwork(ScoresCalculator calculator)
Generate a network from a given scores calculator . |
static ProteinNetwork |
NetworkGenerator.generateNetwork(ScoresCalculator calculator,
float cutOff)
Generate a network from a given scores calculator . |
Uses of ScoresCalculator in methods.scores |
---|
Classes in methods.scores that implement ScoresCalculator | |
---|---|
class |
HartCalculator
Calculates protein-protein interaction scores from purification data according to Hart, G. |
class |
PECalculator
Calculates Purification Enrichment scores according to Collins et al. |
class |
SocioAffinityCalculator
Calculates socio affinity scores according to Gavin et al. |
Methods in methods.scores with parameters of type ScoresCalculator | |
---|---|
static float |
ComplexScoreCalculator.averageComplexScore(ScoresCalculator scoreCalc,
Complex complex)
Calculates the score of a complex using a given scores calculator. |
static float |
ComplexScoreCalculator.averageComplexScore(ScoresCalculator scoreCalc,
Complex complex,
boolean ignoreMissingScores)
Calculates the score of a complex using a given scores calculator. |
static float |
ComplexScoreCalculator.averageComplexSetScore(ScoresCalculator scoreCalc,
ComplexSet complexSet,
boolean weighted)
Calculates the average complex score of a given complex set. |
static float |
ComplexScoreCalculator.averageComplexSetScore(ScoresCalculator scoreCalc,
ComplexSet complexSet,
boolean weighted,
boolean ignoreMissingScores)
Calculates the average complex score of a given complex set. |
Uses of ScoresCalculator in methods.scores.go |
---|
Subinterfaces of ScoresCalculator in methods.scores.go | |
---|---|
interface |
FunctionalSimilarities
This interface is implemented by classes which calculate a semantic similarity score of two given proteins based on GO information. |
Classes in methods.scores.go that implement ScoresCalculator | |
---|---|
class |
FunctionalSimilaritiesSchlicker
Implements the calculation of functional similarites between proteins as described in Schlicker, A.; Domingues, F. |
Uses of ScoresCalculator in userinterface.gui |
---|
Constructors in userinterface.gui with parameters of type ScoresCalculator | |
---|---|
GUIComplexScorer(ComplexSet complexSet,
ScoresCalculator scoresCalc,
Frame parent,
String title)
|
|
||||||||||
PREV NEXT | FRAMES NO FRAMES |