procope.methods.clustering
Interface Clusterer

All Known Implementing Classes:
DummyClusterer, DummyClusterer, HierarchicalClusterer, MarkovClusterer

public interface Clusterer

Common interface implemented by clustering methods which take a ProteinNetwork as input and return a set of clusters calculated on that similarity network.

Author:
Jan Krumsiek

Method Summary
 ComplexSet cluster(ProteinNetwork net)
          Calculates a clustering represented as ComplexSet from a given scores network.
 

Method Detail

cluster

ComplexSet cluster(ProteinNetwork net)
Calculates a clustering represented as ComplexSet from a given scores network. Note: All implementing clustering methods should work on similarities, not distances

Parameters:
net - similarity network which will be clustered
Returns:
the resulting clustering