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java.lang.Objectprocope.methods.scores.ScoresCalculator
procope.methods.scores.HartCalculator
public class HartCalculator
Calculates protein-protein interaction scores from purification data according to
Hart, G. T.; Lee, I. & Marcotte, E. R.
A high-accuracy consensus map of yeast protein complexes reveals modular nature of gene essentiality.
BMC Bioinformatics, 2007, 8, 23
For more information about this scoring method please check out the online manual.
Constructor Summary | |
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HartCalculator(Collection<PurificationData> datasets)
Creates a new scores calculator from a list of purification data sets. |
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HartCalculator(PurificationData dataset)
Creates a new scores calculator from a given purification data set. |
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HartCalculator(PurificationData[] datasets)
Creates a new scores calculator from an array of purification data sets. |
Method Summary | |
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Set<Integer> |
getProteins()
Returns all proteins of the purification data set used in this scores calculator |
float |
getScore(int prot1,
int prot2)
Calculates the score of the given protein. |
Methods inherited from class procope.methods.scores.ScoresCalculator |
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getScore |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public HartCalculator(PurificationData dataset)
dataset
- purification dataset to be usedpublic HartCalculator(Collection<PurificationData> datasets)
datasets
- purfication datasets to be usedpublic HartCalculator(PurificationData[] datasets)
datasets
- purfication datasets to be usedMethod Detail |
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public float getScore(int prot1, int prot2)
getScore
in class ScoresCalculator
prot1
- first proteinprot2
- second protein
public Set<Integer> getProteins()
getProteins
in interface ProteinSet
getProteins
in class ScoresCalculator
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