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Uses of PurificationData in procope.data.networks |
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Methods in procope.data.networks that return PurificationData | |
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PurificationData |
ProteinNetwork.derivePurificationData(boolean poolBaits)
Creates a purification data object from a directed network. |
Uses of PurificationData in procope.data.petrinets |
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Methods in procope.data.petrinets with parameters of type PurificationData | |
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void |
PetriNetCreator.addPurificationData(PurificationData data,
String name)
Adds a purification data set which will be
integrated into the Petri net. |
Uses of PurificationData in procope.data.purifications |
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Methods in procope.data.purifications that return PurificationData | |
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PurificationData |
PurificationData.merge(PurificationData mergeWith)
Merges two purification datasets. |
static PurificationData |
PurificationDataReader.readPurifications(File file)
Read purification data from a given file. |
static PurificationData |
PurificationDataReader.readPurifications(File file,
boolean multiplyPreys)
Read purification data from a given file. |
static PurificationData |
PurificationDataReader.readPurifications(InputStream input)
Read purification data from a given input stream. |
static PurificationData |
PurificationDataReader.readPurifications(InputStream input,
boolean multiplePreys)
Read purification data from a given input stream. |
static PurificationData |
PurificationDataReader.readPurifications(String file)
Read purification data from a given file. |
static PurificationData |
PurificationDataReader.readPurifications(String file,
boolean multiplyPreys)
Read purification data from a given file. |
Methods in procope.data.purifications with parameters of type PurificationData | |
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PurificationData |
PurificationData.merge(PurificationData mergeWith)
Merges two purification datasets. |
static void |
PurificationDataWriter.writePurificationData(PurificationData data,
File outfile)
Writes a purification data set to a given file. |
static void |
PurificationDataWriter.writePurificationData(PurificationData data,
OutputStream stream)
Writes a purification data set to a given output stream |
static void |
PurificationDataWriter.writePurificationData(PurificationData data,
String outfile)
Writes a purification data set to a given file. |
static void |
PurificationDataWriter.writeXGMML(PurificationData data,
File outfile)
Creates a Cytoscape-compatible XGMML file. |
static void |
PurificationDataWriter.writeXGMML(PurificationData data,
OutputStream outstream)
Creates a Cytoscape-compatible XGMML file, but writes to an output stream. |
static void |
PurificationDataWriter.writeXGMML(PurificationData data,
String outfile)
Creates a Cytoscape-compatible XGMML file. |
Uses of PurificationData in procope.examples |
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Constructors in procope.examples with parameters of type PurificationData | |
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DummyScores(PurificationData data)
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Uses of PurificationData in procope.methods.scores |
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Constructors in procope.methods.scores with parameters of type PurificationData | |
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DiceCoefficients(PurificationData data)
Creates a new Dice coefficients calculator |
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HartCalculator(PurificationData dataset)
Creates a new scores calculator from a given purification data set. |
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HartCalculator(PurificationData[] datasets)
Creates a new scores calculator from an array of purification data sets. |
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PECalculator(PurificationData data,
float r,
float pseudocount)
Creates a new Purification Enrichment calculator. |
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SocioAffinityCalculator(PurificationData data)
Creates a new socio affinity scores calculator based on a given purification data set. |
Constructor parameters in procope.methods.scores with type arguments of type PurificationData | |
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HartCalculator(Collection<PurificationData> datasets)
Creates a new scores calculator from a list of purification data sets. |
Uses of PurificationData in procope.methods.scores.bootstrap |
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Methods in procope.methods.scores.bootstrap that return PurificationData | |
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PurificationData |
PurificationBootstrapSamples.getSample(int sample)
Returns a given sample from the set. |
Constructors in procope.methods.scores.bootstrap with parameters of type PurificationData | |
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PurificationBootstrapSamples(PurificationData data,
int numberOfSamples)
Creates a new set of bootstrap samples. |
Uses of PurificationData in procope.tools.userclasses |
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Methods in procope.tools.userclasses with parameters of type PurificationData | |
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ScoresCalculator |
UserScoresCalculator.generateScoresCalculator(PurificationData[] data,
Object... additionalParameters)
Generates the actual ScoresCalculator object for this user scores
calculator. |
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