- Comparison of scores networks with each other
- Evaluation of scores network using complex
enrichment and ROC
curves
- Different network manipulation/merging/filtering steps
- Iterating over networks
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- Network loading from the file system
- Network comparison, correlation coefficient
calculation
- Removing edges below a given score (score cutoff)
- Random network generation
- Complex set loading from the file system
- Removing complexes with more than a given number of
proteins (size cutoff)
- Calculating complex enrichments
- Calculating, plotting and saving ROC curves
- Network merging
- Network filtering using boolean expressions
- Network iteration
- Working with the ProteinManager (internal protein IDs)
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