Uses of Class
procope.methods.scores.ScoresCalculator

Packages that use ScoresCalculator
procope.data.networks   
procope.evaluation.complexquality.go   
procope.examples   
procope.methods.scores   
procope.tools.userclasses   
 

Uses of ScoresCalculator in procope.data.networks
 

Methods in procope.data.networks with parameters of type ScoresCalculator
static ProteinNetwork NetworkGenerator.generateNetwork(ScoresCalculator calculator)
          Generate a network from a given scores calculator.
static ProteinNetwork NetworkGenerator.generateNetwork(ScoresCalculator calculator, float cutOff)
          Generate a network from a given scores calculator.
 

Uses of ScoresCalculator in procope.evaluation.complexquality.go
 

Subclasses of ScoresCalculator in procope.evaluation.complexquality.go
 class FunctionalSimilarities
          This class is extended by classes which calculate a semantic similarity score of two given proteins based on GO information.
 class FunctionalSimilaritiesSchlicker
          Implements the calculation of functional similarites between proteins as described in
 

Uses of ScoresCalculator in procope.examples
 

Subclasses of ScoresCalculator in procope.examples
 class DummyScores
           
 

Uses of ScoresCalculator in procope.methods.scores
 

Subclasses of ScoresCalculator in procope.methods.scores
 class DiceCoefficients
          Provides an efficient implementation of "Dice coefficients", a protein protein affinity measure derived from purification datasets according to
 class HartCalculator
          Calculates protein-protein interaction scores from purification data according to
 class PECalculator
          Calculates Purification Enrichment scores according to
 class SocioAffinityCalculator
          Calculates socio affinity scores according to
 

Methods in procope.methods.scores with parameters of type ScoresCalculator
static float ComplexScoreCalculator.averageComplexScore(ScoresCalculator scoreCalc, Complex complex)
          Calculates the score of a complex using a given scores calculator.
static float ComplexScoreCalculator.averageComplexScore(ScoresCalculator scoreCalc, Complex complex, boolean ignoreMissingScores)
          Calculates the score of a complex using a given scores calculator.
static float ComplexScoreCalculator.averageComplexSetScore(ScoresCalculator scoreCalc, ComplexSet complexSet, boolean weighted)
          Calculates the average complex score of a given complex set.
static float ComplexScoreCalculator.averageComplexSetScore(ScoresCalculator scoreCalc, ComplexSet complexSet, boolean weighted, boolean ignoreMissingScores)
          Calculates the average complex score of a given complex set.
 

Uses of ScoresCalculator in procope.tools.userclasses
 

Methods in procope.tools.userclasses that return ScoresCalculator
 ScoresCalculator UserScoresCalculator.generateScoresCalculator(PurificationData[] data, Object... additionalParameters)
          Generates the actual ScoresCalculator object for this user scores calculator.