methods.interologs.blast
Interface BlastBBHConstraints
- All Known Implementing Classes:
- BlastBBHAlignmentLengthConstraint
public interface BlastBBHConstraints
Interface which is implemented by classes which define constraints for
the calculation of BBHs from BLAST hits.
- Author:
- Jan Krumsiek
Method Summary |
boolean |
acceptBBH(int protein1,
int protein2,
BlastHit forwardHit,
BlastHit backwardHit)
Function which is called by the BBH calculator to ask whether a given
BBH is accepted or not. |
acceptBBH
boolean acceptBBH(int protein1,
int protein2,
BlastHit forwardHit,
BlastHit backwardHit)
- Function which is called by the BBH calculator to ask whether a given
BBH is accepted or not.
- Parameters:
protein1
- first protein of the BBHprotein2
- second protein of the BBHforwardHit
- first BLAST hit leading to that BBHbackwardHit
- second BLAST hit leading to that BBH
- Returns:
- whether the BBH is accepted or not