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Interface Summary | |
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InterologScorer | Implemented by classes which calculate scores for homology-transferred interactions (interologs). |
Class Summary | |
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AlignmentInterologScorer | Implements interolog scoring using similarity or identity from pairwise sequence alignments of the homologs. |
EvalueInterologScorer | Implements interolog scoring using the geometric mean of the two BLAST evalues involved in a transferred protein interaction (when transferred using bidirectional best hits from BLAST). |
InterologsCalculator | Calculates interologs from a given set of binary interactions and a (homology) mapping between proteins. |
Enum Summary | |
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AlignmentInterologScorer.AlignmentScoring | Defines the alignment measure which will be used |
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