Uses of Interface
methods.interologs.InterologScorer

Packages that use InterologScorer
methods.interologs   
 

Uses of InterologScorer in methods.interologs
 

Classes in methods.interologs that implement InterologScorer
 class AlignmentInterologScorer
          Implements interolog scoring using similarity or identity from pairwise sequence alignments of the homologs.
 class EvalueInterologScorer
          Implements interolog scoring using the geometric mean of the two BLAST evalues involved in a transferred protein interaction (when transferred using bidirectional best hits from BLAST).
 

Methods in methods.interologs with parameters of type InterologScorer
static ProteinNetwork InterologsCalculator.calculateInterologs(ProteinNetwork toTransfer, ProteinNetwork mapping, InterologScorer scorer)
          Calculates interologs of an interaction network using a given protein mapping (which should contain homology information like bidirectional best hits).