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Packages that use BlastHits | |
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methods.interologs | |
methods.interologs.blast |
Uses of BlastHits in methods.interologs |
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Constructors in methods.interologs with parameters of type BlastHits | |
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EvalueInterologScorer(BlastHits forward,
BlastHits backward)
Creates a new e-value interolog scorer from the given BLAST results. |
Uses of BlastHits in methods.interologs.blast |
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Methods in methods.interologs.blast that return BlastHits | |
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static BlastHits |
BlastHitFileParser.parseBlastHits(File hitfile)
Parse BLAST hits from a given BLAST hit file in tabular format. |
static BlastHits |
BlastHitFileParser.parseBlastHits(File hitfile,
String organism1,
String organism2)
Parse BLAST hits from a given BLAST hit file in tabular format. |
static BlastHits |
BlastHitFileParser.parseBlastHits(InputStream input)
Parse BLAST hits from a given input stream. |
static BlastHits |
BlastHitFileParser.parseBlastHits(InputStream input,
String organism1,
String organism2)
Parse BLAST hits from a given input stream. |
static BlastHits |
BlastHitFileParser.parseBlastHits(String hitfile)
Parse BLAST hits from a given BLAST hit file in tabular format. |
static BlastHits |
BlastHitFileParser.parseBlastHits(String hitfile,
String organism1,
String organism2)
Parse BLAST hits from a given BLAST hit file in tabular format. |
Methods in methods.interologs.blast with parameters of type BlastHits | |
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ProteinNetwork |
BlastHits.getBidirectionalBestHits(BlastHits backward,
BlastBBHConstraints constraints)
Calculate bidirectional best hits (BBHs). |
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