Uses of Class
methods.clustering.HierarchicalLinkage

Packages that use HierarchicalLinkage
methods.clustering   
 

Uses of HierarchicalLinkage in methods.clustering
 

Methods in methods.clustering that return HierarchicalLinkage
static HierarchicalLinkage HierarchicalLinkage.valueOf(String name)
          Returns the enum constant of this type with the specified name.
static HierarchicalLinkage[] HierarchicalLinkage.values()
          Returns an array containing the constants of this enum type, in the order they are declared.
 

Methods in methods.clustering with parameters of type HierarchicalLinkage
static HierarchicalTreeNode HierarchicalClusteringTrees.clusterSimilarities(ProteinNetwork net, HierarchicalLinkage linkage)
          Performs agglomerative hierarchical clustering on a given network using a given linkage method.
static HierarchicalTreeNode HierarchicalClusteringTrees.clusterSimilarities(ProteinNetwork net, HierarchicalLinkage linkage, Set<Integer> proteins)
          Performs agglomerative hierarchical clustering on a given network using a given linkage method.
 

Constructors in methods.clustering with parameters of type HierarchicalLinkage
HierarchicalClusterer(HierarchicalLinkage linkage, float threshold)
          Creates a hierarchical clusterer with given the given linkage and cutoff threshold.