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java.lang.Objectprocope.methods.scores.ScoresCalculator
procope.methods.scores.SocioAffinityCalculator
public class SocioAffinityCalculator
Calculates socio affinity scores according to
Gavin et al.
Proteome survey reveals modularity of the yeast cell machinery.
Nature, 2006, 440, 631-636
For more information about this scoring method please check out the online manual.
Constructor Summary | |
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SocioAffinityCalculator(PurificationData data)
Creates a new socio affinity scores calculator based on a given purification data set. |
Method Summary | |
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Set<Integer> |
getProteins()
Returns all proteins of the purification data set used in this scores calculator |
float |
getScore(int protA,
int protB)
Calculates the socio affinity score for two given proteins based on the purification data set provided in the constructor. |
Methods inherited from class procope.methods.scores.ScoresCalculator |
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getScore |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public SocioAffinityCalculator(PurificationData data)
data
- purification data set used for scores calculationMethod Detail |
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public float getScore(int protA, int protB)
getScore
in class ScoresCalculator
protA
- first proteinprotB
- second protein
public Set<Integer> getProteins()
getProteins
in interface ProteinSet
getProteins
in class ScoresCalculator
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