procope.methods.clustering
Interface Clusterer
- All Known Implementing Classes:
- DummyClusterer, DummyClusterer, HierarchicalClusterer, MarkovClusterer
public interface Clusterer
Common interface implemented by clustering methods which take a
ProteinNetwork
as input and return a set of clusters calculated
on that similarity network.
- Author:
- Jan Krumsiek
cluster
ComplexSet cluster(ProteinNetwork net)
- Calculates a clustering represented as
ComplexSet
from a given
scores network. Note: All implementing clustering methods should
work on similarities, not distances
- Parameters:
net
- similarity network which will be clustered
- Returns:
- the resulting clustering