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Interface Summary | |
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ProteinSet | This interface is implemented by classes which work on or contain a distinct
set of proteins which are represented by internal IDs (see also:
ProteinManager ). |
Class Summary | |
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FASTAParser | Reads sequences in (multi-)FASTA format. |
LocalizationData | A set of cellular localization information for proteins. |
LocalizationDataReader | Reads localization data from a file or stream. |
Sequences | A set of sequences internally represented by a internal_id=>sequence mapping. |
StringToIntMapper | Maps strings to integers. |
XGMMLWriter | Writes nodes and edges of any network to XGMML format. |
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