procope.methods.interologs
Interface InterologScorer

All Known Implementing Classes:
AlignmentInterologScorer, EvalueInterologScorer

public interface InterologScorer

Implemented by classes which calculate scores for homology-transferred interactions (interologs).

Author:
Jan Krumsiek
See Also:
InterologsCalculator

Method Summary
 float getInterologScore(int source1, int target1, int source2, int target2)
          Calculates the score of a new interolog based on the source proteins (the nodes of the original interaction) and the target proteins (the nodes of the transferred interaction).
 

Method Detail

getInterologScore

float getInterologScore(int source1,
                        int target1,
                        int source2,
                        int target2)
Calculates the score of a new interolog based on the source proteins (the nodes of the original interaction) and the target proteins (the nodes of the transferred interaction).

Parameters:
source1 - source protein 1
target1 - target protein 1
source2 - source protein 2
target2 - target protein 2
Returns:
score for the new interolog