Uses of Interface
methods.scores.ScoresCalculator

Packages that use ScoresCalculator
data.networks   
methods.scores   
methods.scores.go   
userinterface.gui   
 

Uses of ScoresCalculator in data.networks
 

Methods in data.networks with parameters of type ScoresCalculator
static ProteinNetwork NetworkGenerator.generateNetwork(ScoresCalculator calculator)
          Generate a network from a given scores calculator.
static ProteinNetwork NetworkGenerator.generateNetwork(ScoresCalculator calculator, float cutOff)
          Generate a network from a given scores calculator.
 

Uses of ScoresCalculator in methods.scores
 

Classes in methods.scores that implement ScoresCalculator
 class HartCalculator
          Calculates protein-protein interaction scores from purification data according to Hart, G.
 class PECalculator
          Calculates Purification Enrichment scores according to Collins et al.
 class SocioAffinityCalculator
          Calculates socio affinity scores according to Gavin et al.
 

Methods in methods.scores with parameters of type ScoresCalculator
static float ComplexScoreCalculator.averageComplexScore(ScoresCalculator scoreCalc, Complex complex)
          Calculates the score of a complex using a given scores calculator.
static float ComplexScoreCalculator.averageComplexScore(ScoresCalculator scoreCalc, Complex complex, boolean ignoreMissingScores)
          Calculates the score of a complex using a given scores calculator.
static float ComplexScoreCalculator.averageComplexSetScore(ScoresCalculator scoreCalc, ComplexSet complexSet, boolean weighted)
          Calculates the average complex score of a given complex set.
static float ComplexScoreCalculator.averageComplexSetScore(ScoresCalculator scoreCalc, ComplexSet complexSet, boolean weighted, boolean ignoreMissingScores)
          Calculates the average complex score of a given complex set.
 

Uses of ScoresCalculator in methods.scores.go
 

Subinterfaces of ScoresCalculator in methods.scores.go
 interface FunctionalSimilarities
          This interface is implemented by classes which calculate a semantic similarity score of two given proteins based on GO information.
 

Classes in methods.scores.go that implement ScoresCalculator
 class FunctionalSimilaritiesSchlicker
          Implements the calculation of functional similarites between proteins as described in Schlicker, A.; Domingues, F.
 

Uses of ScoresCalculator in userinterface.gui
 

Constructors in userinterface.gui with parameters of type ScoresCalculator
GUIComplexScorer(ComplexSet complexSet, ScoresCalculator scoresCalc, Frame parent, String title)