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java.lang.Objectprocope.methods.scores.ScoresCalculator
public abstract class ScoresCalculator
Extended by all classes which calculate interaction scores between proteins based on experimental or other data.
Constructor Summary | |
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ScoresCalculator()
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Method Summary | |
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abstract Set<Integer> |
getProteins()
Returns the set of proteins involved in this scores calculator. |
abstract float |
getScore(int protein1,
int protein2)
Returns the interaction score for two given proteins. |
float |
getScore(String protein1,
String protein2)
Returns the interaction score for two given proteins provided as String identifiers. |
Methods inherited from class java.lang.Object |
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clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait |
Constructor Detail |
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public ScoresCalculator()
Method Detail |
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public abstract float getScore(int protein1, int protein2)
protein1
- first proteinprotein2
- second protein
public float getScore(String protein1, String protein2)
protein1
- string identifier of first proteinprotein2
- string identifier of second protein
ProteinManager
public abstract Set<Integer> getProteins()
getProteins
in interface ProteinSet
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