Package methods.interologs.blast

Interface Summary
BlastBBHConstraints Interface which is implemented by classes which define constraints for the calculation of BBHs from BLAST hits.
 

Class Summary
BlastBBHAlignmentLengthConstraint Ensures that BBHs are only accepted if their BLAST alignment covers a minimum fraction of both aligned protein sequences.
BlastHit A single BLAST hit.
BlastHitFileParser Contains static methods to parse hits from a BLAST hit file.
BlastHits Represents an immutable list of BLAST hits which are normally parsed from a BLAST result file.