@article {bioinflmu-1284,
	title = {{ContextMap 2: fast and accurate context-based RNA-seq mapping.}},
	journal = {BMC bioinformatics},
	volume = {16},
	year = {2015},
	pages = {122},
	abstract = {Mapping of short sequencing reads is a crucial step in the analysis of RNA sequencing (RNA-seq) data. ContextMap is an RNA-seq mapping algorithm that uses a context-based approach to identify the best alignment for each read and allows parallel mapping against several reference genomes.},
	doi = {10.1186/s12859-015-0557-5},
	url1 = {<a href="http://www.biomedcentral.com/1471-2105/16/122">Journal link</a>},
	author = {Thomas Bonfert and Evelyn Kirner and Gergely Csaba and Ralf Zimmer and Caroline C. Friedel}
}