@article {bioinflmu-323,
	title = {{ToPNet - an application for interactive analysis of expression data and biological networks}},
	journal = {Bioinformatics},
	volume = {20},
	number = {9},
	year = {2004},
	month = {Jun},
	pages = {1470-1471},
	abstract = {SUMMARY: ToPNet is a new tool for the combined visualization and

exploration of gene networks and expression data. ToPNet provides various ways of

restricting, manipulating and combining biological networks according to

annotation data (e.g. Gene Ontology terms) and presents results to the user via

different visualization procedures and hyperlinks to the underlying data sources.

To easily identify relevant parts of the network, ToPNet provides a method of

detecting significant subnetworks with respect to expression measurements. As

ToPNet is a pure JAVA application with additional scripting capabilities, it is

well-suited as a test-bed for algorithm development and exploratory biological

data analysis alike. AVAILABILITY: ToPNet is freely available for academic

institutions at http://www.biosolveit.de/ToPNet/},
	keywords = {expressionlab@lmu},
	doi = {10.1093/bioinformatics/bth096},
	author = {Daniel Hanisch and Florian Sohler and Ralf Zimmer}
}