@article {bioinflmu-573,
	title = {{Arby: automatic protein structure prediction using profile-profile alignment and confidence measures}},
	journal = {Bioinformatics},
	volume = {20},
	number = {14},
	year = {2004},
	pages = {2228-35},
	abstract = {MOTIVATION: Arby is a new server for protein structure prediction

that combines several homology-based methods for predicting the three-dimensional

structure of a protein, given its sequence. The methods used include a threading

approach, which makes use of structural information, and a profile-profile

alignment approach that incorporates secondary structure predictions. The

combination of the different methods with the help of empirically derived

confidence measures affords reliable template selection. RESULTS: According to

the recent CAFASP3 experiment, the server is one of the most sensitive methods

for predicting the structure of single domain proteins. The quality of template

selection is assessed using a fold-recognition experiment. AVAILABILITY: The Arby

server is available through the portal of the Helmholtz Network for

Bioinformatics at http://www.hnbioinfo.de under the protein structure category.},
	doi = {10.1093/bioinformatics/bth232 },
	pdf = {<a href="/files/oldwebfm//Publications/Arby_automatic_protein_structure_prediction_using_profile-profile_alignment_and_confidence_measures.pdf">PDF</a>},
	author = {Niklas Von {\"O}hsen and Ingolf Sommer and Ralf Zimmer}
}