Serialized Form

Package fern.analysis

Class fern.analysis.IntQueue extends cern.colt.list.IntArrayList implements Serializable

serialVersionUID: 1L

Class fern.analysis.IntStack extends cern.colt.list.IntArrayList implements Serializable

serialVersionUID: 1L

Package fern.cellDesigner.ui

Class fern.cellDesigner.ui.ExtendedPane extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

main

MainFrame main

nodeTypePicker

JComboBox nodeTypePicker

reactionPicker

JComboBox reactionPicker

speciesPicker

JComboBox speciesPicker

initialAmountPicker

JComboBox initialAmountPicker

reactioncoefficientPicker

JComboBox reactioncoefficientPicker

eps

JTextField eps

nc

JTextField nc

thresh

JTextField thresh

num

JTextField num

notList

JList notList

trendList

JList trendList

Class fern.cellDesigner.ui.MainFrame extends JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

network

CellDesignerNetworkWrapper network

overview

OverviewPane overview

extended

ExtendedPane extended

startStopButton

JButton startStopButton

progress

JProgressBar progress

startSimulation

fern.cellDesigner.ui.MainFrame.SimulationAction startSimulation

plugin

FernCellDesignerPlugin plugin

Class fern.cellDesigner.ui.OverviewPane extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

main

MainFrame main

networkStatus

JLabel networkStatus

message

JTextArea message

simulator

JComboBox simulator

time

JTextField time

runs

JTextField runs

Package fern.cytoscape.ui

Class fern.cytoscape.ui.ColorPicker extends JDialog implements Serializable

serialVersionUID: 1L

Serialized Fields

reactionColor

fern.cytoscape.ui.ColorPicker.ColorField reactionColor

amountBottomColor

fern.cytoscape.ui.ColorPicker.ColorField amountBottomColor

amountTopColor

fern.cytoscape.ui.ColorPicker.ColorField amountTopColor

preview

fern.cytoscape.ui.ColorPicker.PreviewField preview

scaleType

JComboBox scaleType

scaleMax

JTextField scaleMax

colcalc

ColorCalculator colcalc

action

fern.cytoscape.ui.ColorPicker.PreviewChangeAction action

Class fern.cytoscape.ui.ExtendedPane extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

main

MainFrame main

nodeTypePicker

JComboBox nodeTypePicker

reactionPicker

JComboBox reactionPicker

speciesPicker

JComboBox speciesPicker

initialAmountPicker

JComboBox initialAmountPicker

reactioncoefficientPicker

JComboBox reactioncoefficientPicker

eps

JTextField eps

nc

JTextField nc

thresh

JTextField thresh

num

JTextField num

notList

JList notList

trendList

JList trendList

Class fern.cytoscape.ui.MainFrame extends JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

network

CytoscapeNetworkWrapper network

overview

OverviewPane overview

extended

ExtendedPane extended

startStopButton

JButton startStopButton

progress

JProgressBar progress

startSimulation

fern.cytoscape.ui.MainFrame.SimulationAction startSimulation

recentNetworkChecker

NetworkChecker recentNetworkChecker

style

FernVisualStyle style

Class fern.cytoscape.ui.OverviewPane extends JPanel implements Serializable

serialVersionUID: 1L

Serialized Fields

main

MainFrame main

networkStatus

JLabel networkStatus

message

JTextArea message

simulator

JComboBox simulator

time

JTextField time

realTime

JCheckBox realTime

runs

JTextField runs

visu

JCheckBox visu

Package fern.network

Class fern.network.FeatureNotSupportedException extends Exception implements Serializable

serialVersionUID: 1L

Package fern.tools.gnuplot

Class fern.tools.gnuplot.GnuPlot extends JFrame implements Serializable

serialVersionUID: 1L

Serialized Fields

img

BufferedImage img

commands

List<E> commands

axes

List<E> axes

clearedAxes

List<E> clearedAxes

defaultStyle

String defaultStyle