halo.userinterface.gui
Class GuiNormal

java.lang.Object
  halo.userinterface.gui.GuiNormal

public class GuiNormal
extends java.lang.Object

'Interface' which connects GUI and methods for normalization

Author:

Stefanie Kaufmann

Field Summary

boolean	done
static java.lang.String	MEDIAN
static java.lang.String	STANDARD

Constructor Summary

GuiNormal()

Method Summary

void	calcNormalization() Creates Normalization object and performs normalization
CorrectionFactors	getCF() Returns the correction factors
Normalization	getNormalization() Returns the normalization Object
int	getRatioMethod() Returns the method for ratio calculation
boolean	hasNormalization() Checks whether normalization has been performed
void	setData(Data data) Sets the data object for normalization
void	setMethod(java.lang.String method) Sets the name of the normalization method
void	setRatioMethod(int method) Changes the method used for ratio calculation
void	setReplicate(int replicate) Sets the replicate for normalization

Methods inherited from class java.lang.Object

equals, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

STANDARD

public static final java.lang.String STANDARD

See Also:

Constant Field Values

MEDIAN

public static final java.lang.String MEDIAN

See Also:

Constant Field Values

done

public boolean done

Constructor Detail

GuiNormal

public GuiNormal()

Method Detail

calcNormalization

public void calcNormalization()

Creates Normalization object and performs normalization

setRatioMethod

public void setRatioMethod(int method)

Changes the method used for ratio calculation

Parameters:

method - The method to be used for ratio calculation

setData

public void setData(Data data)

Sets the data object for normalization

Parameters:

data - Data object for normalization

setReplicate

public void setReplicate(int replicate)

Sets the replicate for normalization

Parameters:

replicate - The replicate for normalization

setMethod

public void setMethod(java.lang.String method)

Sets the name of the normalization method

Parameters:

method - Name of the regression method

getNormalization

public Normalization getNormalization()

Returns the normalization Object

Returns:

The normalization object

getCF

public CorrectionFactors getCF()

Returns the correction factors

Returns:

The correction factors

getRatioMethod

public int getRatioMethod()

Returns the method for ratio calculation

Returns:

The ratio calculation method

hasNormalization

public boolean hasNormalization()

Checks whether normalization has been performed

Returns:

True if normalization was done