Package procope.data.networks

Interface Summary

NetworkSearchCallback

This interface must be implemented by classes which function as callback adapter for the network search functions ProteinNetwork.depthFirstSearch(int, NetworkSearchCallback) and ProteinNetwork.breadthFirstSearch(int, NetworkSearchCallback).

Class Summary

CombinationRules	A set of combination rules defines how the combination of two networks is accomplished.
NetworkEdge	Represents one edge in a ProteinNetwork.
NetworkGenerator	Contains static methods to generate networks from scores calculators or random networks.
NetworkReader	Contains various static methods to read networks from files and streams.
NetworkWriter	Contains different methods to write ProteinNetwork objects to files or streams.
ProteinNetwork	Represents a network of binary protein interactions.

Enum Summary

CombinationRules.CombinationType	Defines how the nodes of both source networks are combined into a new set of nodes
CombinationRules.WeightMergePolicy	Defines how the weights of identical edges are combined for the resulting network