procope.evaluation.complexquality.go
Class FunctionalSimilarities

java.lang.Object
  procope.methods.scores.ScoresCalculator
      procope.evaluation.complexquality.go.FunctionalSimilarities

All Implemented Interfaces:

ProteinSet

Direct Known Subclasses:

FunctionalSimilaritiesSchlicker

public abstract class FunctionalSimilarities
extends ScoresCalculator

This class is extended by classes which calculate a semantic similarity score of two given proteins based on GO information.

This class is basically just a wrapper of the ScoresCalculator

Author:

Jan Krumsiek

Constructor Summary

FunctionalSimilarities()

Method Summary

abstract float

getScore(int protein1, int protein2) Calculates the semantic similarity score of two given proteins.

Methods inherited from class procope.methods.scores.ScoresCalculator

getProteins, getScore

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Constructor Detail

FunctionalSimilarities

public FunctionalSimilarities()

Method Detail

getScore

public abstract float getScore(int protein1,
                               int protein2)

Calculates the semantic similarity score of two given proteins.

Specified by:

getScore in class ScoresCalculator

Parameters:

protein1 - first protein

protein2 - second protein

Returns:

interaction score of the two proteins