| 004 | PT-4 | Tim Schäfer, Patrick May and Ina Koch Extension of protein topologies by ligand interactions: computation and visualization |
| 014 | PT-14 | Achim Brunner, Eva Keidel, Josef Kellermann and Friedrich Lottspeich ICPLQuant - a directed proteomics tool for isotope labelling proteomics |
| 017 | PT-17 | Tobias Petri, Evi Berchtold, Ralf Zimmer and Caroline C. Friedel Detection and correction of probe-level measurement artefacts on microarrays |
| 025 | PT-25 | Ivan Kondofersky Estimating hidden components in kinetic systems using functional data analysis |
| 033 | PT-33 | Rainer Von Den Berken and Markus Gumbel OODB4Genomics: An object-oriented database approach for biomedical data in clinical bioinformatics |
| 036 | PT-36 | Hendrik Schäfer and Ina Koch A pipeline to explore alternative splicing events |
| 045 | PT-45 | Ferdinand Stückler, Jan Krumsiek, Gabriele Kastenmüller, Susanne Krug, Manuela Rist, Thomas Skurk, Karsten Suhre, Hans Hauner, Hannelore Daniel and Fabian J. Theis Analysis of metabolic profiles using model-driven metabolite ratios |
| 051 | PT-51 | Björn Schwalb, Mai Sun, Daniel Schulz, Nicole Pirkl, Laurent Lariviere, Kerstin Maier, Achim Tresch and Patrick Cramer Comparative Dynamic Transcriptome Analysis (cDTA) reveals mutual feedback between mRNA synthesis and degradation |
| 067 | PT-67 | Alexander Leow IntronBase: A new resource for mining gene structure of orthologous genes from nine metazoa. |
| 073 | PT-73 | Baiba Vilne, Monika Kröger, Rouzanna Istvanffy, Christina Eckl, Franziska Bock, Matthias Schiemann, Christian Peschel, Volker Stümpflen, Hans-Werner Mewes and Robert A.J. Oostendorp Regulatory networks of hematopoietic stem cells and their micro-environment |
| 074 | PT-74 | Manuela Hische, Abdelhalim Larhlimi, Franziska Schwarz, Antje Fischer-Rosinsky, Thomas Bobbert, Anke Assmann, Gareth Catchpole, Andreas Pfeiffer, Lothar Willmitzer, Joachim Selbig and Joachim Spranger A distinct metabolic signature predicts development of fasting plasma glucose |
| 075 | PT-75 | Tina Meyer, Natascha Hill, Ralph Tiedemann and Stefanie Hartmann Computational Analysis of Mobile Elements in Intron-Sequences of Invertebrates |
| 077 | PT-77 | Nadine Albrecht, Hans-Werner Mewes and Thorsten Schmidt Regulatory action of lincRNAs on alternative transcript events |
| 078 | PT-78 | Martin Kötzing, Christoph Kaleta, Martin Bartl and Stefan Schuster Dynamic Optimization of Nitrogen Assimilation in Chlamydomonas reinhardtii |
| 079 | PT-79 | Palani Kannan Kandavel, Markus Goeker and Hans-Peter Klenk Inferring functional genome classifications from their annotated proteins |
| 080 | PT-80 | Andreas Ströhlein, Hon Q. Tran, Antje Krause and Paul M. Selzer Bacterial Pathogens and their Pan-Proteome - From Next-Generation Sequencing to Target Identification |
| 081 | PT-81 | Christine Gläßer, Georg Haberer and Klaus F. X. Mayer Retrograde Signaling in Plants: its nature and contributing pathways |
| 082 | PT-82 | Susann Vorberg, Christian Buning and Ina Koch Sodium Dependent Glucose Transporter (SGLT) 1 / 2 - Elucidating Inhibitor SAR and Selectivity using Homology Modelling and 3D QSAR Studies |
| 083 | PT-83 | Hendrik B. Tiedemann, Elida Schneltzer, Bastian Hoesel, Johannes Beckers, Gerhard K. H. Przemeck and Martin Hrabé De Angelis From Dynamic Expression Patterns to Boundary Formation in the Presomitic Mesoderm |
| 084 | PT-84 | Christoph J. Thieme, Lydia Gramzow and Günter Theißen SplamiR - Predicting a new class of plant microRNAs |
| 085 | PT-85 | Daniel Ellwanger, Florian Büttner, Hans-Werner Mewes and Volker Stümpflen The sufficient minimal set of miRNA seed types |
| 086 | PT-86 | Kai Christian Bader and Harald Meier Interactive primer- and probe-design with CaSSiS |
| 087 | PT-87 | Regina Augustin, Stefan F. Lichtenthaler, Kristina Endres, Sven Reinhardt, Peer-Hendrik Kuhn, Michael Greeff, Daniela Vogt-Weisenhorn, Jens Hansen, Wolfgang Wurst and Dietrich Trümbach Bioinformatics approach: Regulation of Alzheimer's disease-related genes by modules of TFBSs and microRNAs |
| 088 | PT-88 | Christoph Kaleta, Luis Filipe De Figueiredo, Sarah Werner, Reinhard Guthke, Michael Ristow and Stefan Schuster In Silico Evidence for Gluconeogenesis From Fatty Acids in Humans |
| 089 | PT-89 | Florian Heinke, Anne Tuukkanen and Dirk Labudde Analysis of membrane protein stability in nephrogenic diabetes insipidus by multiple energy profile alignment approach, MEPAL |
| 090 | PT-90 | Günter Jäger, Florian Battke and Kay Nieselt TIALA - Visual Time Series Alignment Analysis |
| 091 | PT-91 | Thomas Ulas and Dietmar Schomburg Genome-scale reconstruction and analysis of the metabolic network in the hyperthermophilic Archaeon Sulfolobus solfataricus |
| 092 | PT-92 | Susanne Quester and Dietmar Schomburg Enzyme Detector - integrated genomic enzyme function prediction |
| 093 | PT-93 | Simon Domke, Suparna Mitra, Nico Weber, Stephan Schuster, Thomas Rattei and Daniel Huson MEGAN-DB - The MEtaGenome ANalyzer DataBase |
| 094 | PT-94 | Thomas Bonfert, Gergely Csaba, Ralf Zimmer and Caroline C. Friedel Maximizing the number of aligned reads from RNA-Seq data |
| 095 | PT-95 | Holger Maier, Christoph Lengger, Ralph Steinkamp, Anja Berger, Helmut Fuchs, Valérie Gailus-Durner and Martin Hrabé De Angelis MausDB: the phenotype- and mouse management system of the German Mouse Clinic |
| 096 | PT-96 | Daniela Keller and Joerg Schultz Language dynamics revealed by morpheme networks |
| 097 | PT-97 | Michaela Matthes, Julia Schechter, Martin Preusse, Sebastian Götz, Bernd Lentes, Daniela Mayer, Fabian J. Theis, Wolfgang Wurst, Nilima Prakash and Dietrich Trümbach IDGenes: A reference database for dynamic modelling of genetic interactions in the developing mouse brain |
| 098 | PT-98 | Joachim Nöthen, Jörg Ackermann, Enrico Schleiff and Ina Koch Reduction techniques for validation of metabolic networks in Arabidopsis thaliana |
| 099 | PT-99 | Christian Ried, Jan Kirrbach and Dieter Langosch Mapping the human single-span membrane proteome for self-interacting transmembrane domains |
| 100 | PT-100 | Philipp Gormanns, Stefan Reckow, Joseph C. Poczatek, Chris W. Turck and Claude Lechene Semi-automated image segmentation of Multi Isotope Imaging Mass Spectrometry data in the ImageJ plugin "OpenMIMS" |
| 101 | PT-101 | Rocio Rebollido-Rios and Daniel Hoffmann The role of calcium ions for the stability of Sonic Hedgehog protein |
| 102 | PT-102 | Stefan Dietrich, Natascha Hill, Christoph Bleidorn and Stefanie Hartmann Survey & evolutionary analysis of snoRNAs in annelid introns. |
| 103 | PT-103 | Marius Byl, Thomas Bukur, Jelle Scholtalbers, Ludmila Schemarow, Martin Löwer, John Castle and Ugur Sahin TEA - TRON Expression Atlas: A Web-based Tool for Visualizing and Interpreting Next Generation Sequencing Expression Data |
| 104 | PT-104 | Alexander Schmitz, Jörg Ackermann, Claudia Döring, Martin-Leo Hansmann and Ina Koch Image analysis of cancerous cells |
| 105 | PT-105 | Mohammad Aminisharifabad, Verena Wolf and David Spieler Efficient Steady State Solution of Stochastic Systems Chemical Reactions |
| 106 | PT-106 | Katrin Illner Bayesian blind source separation of microarray data using graph-delayed correlation |
| 107 | PT-107 | Moritz Aschoff, Agnes Hotz-Wagenblatt, Karl-Heinz Glatting, Matthias Fischer, Roland Eils and Rainer König Computational Analysis of Alternative Splicing in Cancer using RNA-Seq |
| 108 | PT-108 | Nils Hoffmann, Mathias Wilhelm, Kai Stadermann and Jens Stoye Maui and Maltcms - A Graphical User Interface and Application Framework for High-Throughput Metabolomics |
| 109 | PT-109 | Malte Mader, Ronald Simon, Sascha Steinbiss and Stefan Kurtz FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context |
| 110 | PT-110 | Tim Kacprowski, Nadezhda T. Doncheva, David Buezas and Mario Albrecht Disease gene prioritization by combining network information and functional knowledge |
| 111 | PT-111 | Harald Marx, Thomas Rattei, Simone Lemeer and Bernhard Kuster MScDB: A mass spectrometry centric protein sequence database |
| 112 | PT-112 | Alexander Cecil, Santosh Nilla, Benjamin Schaefer, Christoph Sotriffer and Thomas Dandekar DrugPoint - a retrieval software and databank to connect proteins, drugs and targets. |
| 113 | PT-113 | Timo Lühr, Maurice Scheer, Melanie Busch, Michael Rother, Ida Schomburg and Dietmar Schomburg BRIME: A tool for visualization of metabolic models |
| 114 | PT-114 | René Rex and Dietmar Schomburg Xeledon: Efficient enumeration of all steady state cycles in metabolic networks |
| 115 | PT-115 | Maurice Scheer, Antje Chang, Ida Schomburg, Andreas Grote, Michael Rother, Cornelia Munaretto, Carola Söhngen, Sandra Placzek and Dietmar Schomburg The BRENDA enzyme information resource in 2011 |
| 116 | PT-116 | Martin Macguill, Tobias Petri and Ralf Zimmer On Risk Stratification Strategies in Intensive Care Medicine |
| 117 | PT-117 | Sergii Novotarskyi, Iurii Sushko, Robert Körner and Igor Tetko Using docking-derived protein-ligand atom pair descriptors to increase performance of QSAR models for human CYP450 inhibition |
| 118 | PT-118 | Iurii Sushko, Sergii Novotarskyi, Robert Körner and Igor Tetko Online chemical modeling environment (OCHEM): web platform for data storage, model development and publishing of physicochemical and biological activities of small molecules |
| 119 | PT-119 | Bernhard Renard, Martin Löwer, Jos De Graaf, Mustafa Diken, Özlem Türeci, Cedrik Britten, Sebastian Kreiter, Michael Koslowski, John Castle and Ugur Sahin Framework for confidence-based somatic mutation detection |
| 120 | PT-120 | Mahmut Kara and Martin Zacharias Comparison of the fine structure and dynamics of damaged and intact DNA |
| 121 | PT-121 | Franziska Zickmann and Bernhard Renard Influence of Target and Decoy Database Size on Peptide Identification Confidence |
| 122 | PT-122 | Philipp Koch, Bryan Downie, Andreas Petzold, Niels Jahn, Marco Groth, Stefan Taudien, Kathrin Reichwald and Matthias Platzer KILAPE: A novel pipeline for the assembly of complex genomes from next-generation sequencing data. |
| 123 | PT-123 | Martin S. Lindner and Bernhard Y. Renard Risks for Specificity and Sensitivity in Metagenomic Classification Experiments |
| 124 | PT-124 | Vipul Patel, Geo Velikkakam James, Ales Pecinka and Korbinian Schneeberger Genotyping-by-sequencing of thousands of individuals |
| 125 | PT-125 | Piotr Wojtek Dabrowski, Michael Goltz and Andreas Nitsche An alignment editing tool for the design of nucleotide sequence-based assays |
| 126 | PT-126 | Anton Thomma, Stefanie Widder and Thomas Rattei Age Classification of Genomic DNA from Metagenomes |
| 127 | PT-127 | Xavier Lucas, Björn Andreas Grüning, Christian Senger and Stefan Günther Compound Library Preparation in Galaxy: Application to HT Docking |
| 128 | PT-128 | Tihamer Geyer Using Dynamic Graphs to Quantitatively Visualize Agglomeration in Spatial Simulations |
| 129 | PT-129 | Thomas Weinmaier, Dmitrij Turaev, Yuliang Jin, Hernan Makse and Thomas Rattei Protein interaction networks - now and then |
| 130 | PT-130 | Dmitrij Turaev, Michael Sommer and Thomas Rattei Evaluation And Comparison Of Different Taxonomic Classification Approaches Of Metagenomic Sequences |
| 131 | PT-131 | Jörg Bartel, Melanie Kahle, Jörn Leonhardt, Susanne Neschen and Volker Stümpflen A systems-biological perspective of non-alcoholic fatty liver disease in mice |
| 132 | PT-132 | Dirk Willrodt, Bernhard Haubold and Stefan Kurtz Memory efficient calculation of phylogenetic distances for whole genome sequences |
| 133 | PT-133 | Dmitry Ivankov, Stefano Bonissoni, Pavel Pevzner and Dmitrij Frishman Analysis of cleaved N-terminal sequences coming from MS/MS proteomics for E.coli and S.cerevisiae |
| 134 | PT-134 | Stephan Flemming, Björn Andreas Grüning, Thomas Häupl and Stefan Günther A framework for analysis of DNA methylation data |
| 135 | PT-135 | Jan Budczies, Frederick Klauschen, Wolfgang D Schmitt and Carsten Denkert CutoffFinder - Cutoff optimization for diagnostic variables and correlation with clinical outcome and survival data |
| 136 | PT-136 | Stefan Brandmaier, Ullrika Sahlin, Tomas Öberg and Igor Tetko Stepwise D-Optimal design based on latent variables |
| 137 | PT-137 | Haroon Naeem, Ralf Zimmer and Robert Küffner Rigorous assessment of gene set enrichment tests |
| 138 | PT-138 | Stefan Altmann, Ralf Zimmer and Robert Küffner Network Inference in Eukaryotes |
| 140 | PT-140 | Pegah Tavakkolkhah, Ralf Zimmer and Robert Küffner Time-sensitive inference of gene regulatory networks |
| 141 | PT-141 | Arli A. Parikesit, Peter F. Stadler and Sonja J. Prohaska Evolution of domain co-occurrences: some striking results |
| 142 | PT-142 | Ahmed Abdelaziz, Iurii Sushko, Wolfram Teetz, Robert Körner, Sergii Novotarskyi and Igor Tetko QSAR modeling for In vitro assays: linking ToxCast database to the integrated modeling framework OCHEM |
| 143 | PT-143 | Stefka Tyanova, Jürgen Cox, Dmitrij Frishman and Matthias Mann Effect of Phosphorylation on Ionization Efficiency during Mass-spectrometry Experiments |
| 144 | PT-144 | Ulrike Haase, Marc Bonin, Stephan Flemming, Frank Buttgereit, Till Sörensen and Thomas Häupl A clinical database for networking in multicenter studies |
| 145 | PT-145 | Till Sörensen, Ursula Schulte-Wrede, Andreas Grützkau and Thomas Häupl Automated and Standardized Clustering of Flow Cytometry Data |
| 146 | PT-146 | Konrad Grützmann, Sebastian Böcker and Stefan Schuster Combinatorics of aliphatic amino acids |