A B C D E F G H I L M N P R S T U V W X

L

label - Variable in class procope.methods.clustering.HierarchicalTreeNode

Contains the item associated with this node if this is a leaf node or -1 if this is an inner node

LIBRARY_NAME - Static variable in class procope.tools.Tools

Name of this library

loadProteinAnnotations(String) - Static method in class procope.tools.namemapping.ProteinManager

Load protein annotations from a given file.

loadProteinAnnotations(InputStream) - Static method in class procope.tools.namemapping.ProteinManager

Load protein annotations from a given stream.

loadSequences(String) - Static method in class procope.methods.interologs.FASTAParser

Loads sequences from a given multi-FASTA file

loadSequences(File) - Static method in class procope.methods.interologs.FASTAParser

Loads sequences from a given multi-FASTA file

loadSequences(InputStream) - Static method in class procope.methods.interologs.FASTAParser

Loads sequences from a given InputStream, requires multi-FASTA format data

LocalizationData - Class in procope.data

A set of cellular localization information for proteins.

LocalizationData() - Constructor for class procope.data.LocalizationData

Creates an empty localization data set.

LocalizationDataReader - Class in procope.data

Reads localization data from a file or stream.

logdhyper(int, int, int, int) - Static method in class procope.tools.math.HypergeometricDistribution

Calculates logarithm of a value of the density function.

logphyper(int, int, int, int, boolean) - Static method in class procope.tools.math.HypergeometricDistribution

Calculates logarithm of a value of the cumulative distribution function.