A B C D E F G H I L M N P R S T U V W X

I

indexOf(int) - Method in class procope.data.complexes.Complex

Returns the index of a given protein in the complex.

InterologsCalculator - Class in procope.methods.interologs

Calculates interologs from a given set of binary interactions and a (homology) mapping between proteins.

InterologScorer - Interface in procope.methods.interologs

Implemented by classes which calculate scores for homology-transferred interactions (interologs).

intersection(Complex) - Method in class procope.data.complexes.Complex

Returns the intersection of both complexes.

InvalidExpressionException - Exception in procope.tools

Thrown by BooleanExpression.BooleanExpression(String) if the specified expression could not be parsed.

InvalidExpressionException(String) - Constructor for exception procope.tools.InvalidExpressionException

Constructs an InvalidExpressionException with the specified detail message.

isAnnotated(int, String) - Method in class procope.evaluation.complexquality.go.GOAnnotations

Checks whether a protein is annotated to a GO term.

isDirected() - Method in class procope.data.networks.ProteinNetwork

Returns if the network is a directed network

isGZIPed(String) - Static method in class procope.tools.Tools

Determines whether a file contains a GZIP header

iterator() - Method in class procope.data.complexes.Complex

Returns an iterator over the interal protein IDs in this complex.

iterator() - Method in class procope.data.complexes.ComplexSet

Returns an iterator over the Complex objects in this set

iterator() - Method in class procope.data.networks.ProteinNetwork

Returns an iterator over all edges of the network.

iterator() - Method in class procope.data.purifications.PurificationData

Returns an iterator over all purification experiments in this dataset.

iterator() - Method in class procope.evaluation.comparison.ComplexMappings

Returns an iterator over the ComplexMapping objects int this list

iterator() - Method in class procope.evaluation.networkperformance.ROCCurve

Returns an iterator over the points in this curve

iterator() - Method in class procope.methods.interologs.blast.BlastHits

Returns an iterator over all BLAST hits contained in this set

iterator() - Method in class procope.methods.scores.bootstrap.BootstrapClusterings

Returns an iterator of the clusterings