A B C D E F G H I L M N P R S T U V W X

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HartCalculator - Class in procope.methods.scores

Calculates protein-protein interaction scores from purification data according to

HartCalculator(PurificationData) - Constructor for class procope.methods.scores.HartCalculator

Creates a new scores calculator from a given purification data set.

HartCalculator(Collection<PurificationData>) - Constructor for class procope.methods.scores.HartCalculator

Creates a new scores calculator from a list of purification data sets.

HartCalculator(PurificationData[]) - Constructor for class procope.methods.scores.HartCalculator

Creates a new scores calculator from an array of purification data sets.

hasEdge(int, int) - Method in class procope.data.networks.ProteinNetwork

Checks whether there is an edge in the network between two given proteins.

hashCode() - Method in class procope.evaluation.complexquality.go.GOTerm

HierarchicalClusterer - Class in procope.methods.clustering

Wrapper for HierarchicalClusteringTrees which implements the Clusterer interface.

HierarchicalClusterer(HierarchicalLinkage, float) - Constructor for class procope.methods.clustering.HierarchicalClusterer

Creates a hierarchical clusterer with given the given linkage and cutoff threshold.

HierarchicalClusteringTrees - Class in procope.methods.clustering

Implements hierarchical agglomerative clustering in O(n²) time and space complexity.

HierarchicalLinkage - Enum in procope.methods.clustering

Linkage methods for hierarchical agglomerative clustering

HierarchicalTreeNode - Class in procope.methods.clustering

Represents one node of the tree generated by hierarchical agglomerative clustering.

HierarchicalTreeNode(int) - Constructor for class procope.methods.clustering.HierarchicalTreeNode

Constructor which takes an item identifier but no similarity (for the leaf nodes)

HierarchicalTreeNode(int, float) - Constructor for class procope.methods.clustering.HierarchicalTreeNode

Constructor which takes an item and a merging similarity

HOMEPAGE - Static variable in class procope.tools.Tools

Homepage of the library

HOMEPAGE_DOCS - Static variable in class procope.tools.Tools

HypergeometricDistribution - Class in procope.tools.math

Contains static methods for the rapid calculation of values from the hypergeometric distribution.

HypergeometricDistribution() - Constructor for class procope.tools.math.HypergeometricDistribution