A B C D E F G H I L M N P R S T U V W X

W

weightsOverlap(ProteinNetwork, ProteinNetwork, boolean) - Static method in class procope.evaluation.comparison.NetworkComparison

Compares the weights of all edges of two networks.

writeAnnotations(Map<String, Object>, PrintWriter) - Static method in class procope.tools.Tools

Writes a given annotations set to a writer.

writeChartToPNG(JFreeChart, File, int, int) - Static method in class procope.tools.ChartTools

Writes a given JFreeChart to a PNG file.

writeComplexes(ComplexSet, String) - Static method in class procope.data.complexes.ComplexSetWriter

Writes a complex set to a specified file.

writeComplexes(ComplexSet, String, String) - Static method in class procope.data.complexes.ComplexSetWriter

Writes a complex set to a specified file.

writeComplexes(ComplexSet, File) - Static method in class procope.data.complexes.ComplexSetWriter

Writes a complex set to a specified file.

writeComplexes(ComplexSet, File, String) - Static method in class procope.data.complexes.ComplexSetWriter

Writes a complex set to a specified file.

writeComplexes(ComplexSet, OutputStream) - Static method in class procope.data.complexes.ComplexSetWriter

Writes a complex set to an OutputStream.

writeComplexes(ComplexSet, OutputStream, String) - Static method in class procope.data.complexes.ComplexSetWriter

Writes a complex set to an OutputStream.

writeEdge(String, String, String, Map<String, ? extends Object>) - Method in class procope.data.XGMMLWriter

Writes an edge to the XGMML data.

writeEdge(String, String, String, Map<String, ? extends Object>, boolean) - Method in class procope.data.XGMMLWriter

Writes an edge to the XGMML data.

writeNetwork(ProteinNetwork, String) - Static method in class procope.data.networks.NetworkWriter

Writes a network to a specified file.

writeNetwork(ProteinNetwork, String, String) - Static method in class procope.data.networks.NetworkWriter

Writes a network to a specified file.

writeNetwork(ProteinNetwork, File) - Static method in class procope.data.networks.NetworkWriter

Writes a network to a specified file.

writeNetwork(ProteinNetwork, File, String) - Static method in class procope.data.networks.NetworkWriter

Writes a network to a specified file.

writeNetwork(ProteinNetwork, OutputStream) - Static method in class procope.data.networks.NetworkWriter

Writes a network to a specified outputstream.

writeNetwork(ProteinNetwork, OutputStream, String) - Static method in class procope.data.networks.NetworkWriter

Writes a network to a specified outputstream.

writeNode(String, String, Map<String, ? extends Object>) - Method in class procope.data.XGMMLWriter

Write a network node in XGMML format.

writeNode(String, String, Map<String, ? extends Object>, boolean) - Method in class procope.data.XGMMLWriter

Write a network node in XGMML format.

writePurificationData(PurificationData, String) - Static method in class procope.data.purifications.PurificationDataWriter

Writes a purification data set to a given file.

writePurificationData(PurificationData, File) - Static method in class procope.data.purifications.PurificationDataWriter

Writes a purification data set to a given file.

writePurificationData(PurificationData, OutputStream) - Static method in class procope.data.purifications.PurificationDataWriter

Writes a purification data set to a given output stream

writeToFile(ROCCurve, String) - Static method in class procope.evaluation.networkperformance.ROCCurveHandler

Writes the data of a ROC curve to a file.

writeToFile(ROCCurve, File) - Static method in class procope.evaluation.networkperformance.ROCCurveHandler

Writes the data of a ROC curve to a file.

writeToFile(String) - Method in class procope.methods.scores.bootstrap.BootstrapClusterings

Writes this clustering collection to a given file.

writeToFile(String) - Method in class procope.methods.scores.bootstrap.PurificationBootstrapSamples

Writes the bootstrap samples contained in this set to a file.

writeToStream(ROCCurve, OutputStream) - Static method in class procope.evaluation.networkperformance.ROCCurveHandler

Write the data of a ROC curve to an output stream.

writeToStream(OutputStream) - Method in class procope.methods.scores.bootstrap.PurificationBootstrapSamples

Writes the bootstrap samples contained in this set to a file.

writeXGMML(ComplexSet, ProteinNetwork, String) - Static method in class procope.data.complexes.ComplexSetWriter

Creates a Cytoscape-compatible XGMML file.

writeXGMML(ComplexSet, ProteinNetwork, File) - Static method in class procope.data.complexes.ComplexSetWriter

Creates a Cytoscape-compatible XGMML file.

writeXGMML(ComplexSet, ProteinNetwork, OutputStream) - Static method in class procope.data.complexes.ComplexSetWriter

Creates a Cytoscape-compatible XGMML file, but writes to an output stream.

writeXGMML(ProteinNetwork, String) - Static method in class procope.data.networks.NetworkWriter

Creates a Cytoscape-compatible XGMML file.

writeXGMML(ProteinNetwork, File) - Static method in class procope.data.networks.NetworkWriter

Creates a Cytoscape-compatible XGMML file.

writeXGMML(ProteinNetwork, OutputStream) - Static method in class procope.data.networks.NetworkWriter

Creates a Cytoscape-compatible XGMML file, but writes to an output stream.

writeXGMML(PurificationData, String) - Static method in class procope.data.purifications.PurificationDataWriter

Creates a Cytoscape-compatible XGMML file.

writeXGMML(PurificationData, File) - Static method in class procope.data.purifications.PurificationDataWriter

Creates a Cytoscape-compatible XGMML file.

writeXGMML(PurificationData, OutputStream) - Static method in class procope.data.purifications.PurificationDataWriter

Creates a Cytoscape-compatible XGMML file, but writes to an output stream.