Datum Date |
Folien Slides |
Dozent Teacher |
Material Material |
24.04.2025
Nr. 1
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Introduction & Organisation SoSe 2020 |
Ralf Zimmer |
Video (52.1MB, 1:04h)
Audio (25.1MB)
Podcast Virologe Prof .Drosten
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24.04.2025
Nr. 1 new
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Introduction new SoSe 2025: Nobelprizes 2024 |
Ralf Zimmer |
Video (109.8MB, 1:38h)
Audio (60.5MB)
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29.04.2025
Nr. 2
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Modeling the Corona Pandemic |
Ralf Zimmer |
inserm-covid19-report
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| 29.04.2025 |
Intro: RNA-based Systems Biology |
Ralf Zimmer |
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01.05.2025
Nr. 3
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Intro to Systems Biology Concepts |
Ralf Zimmer |
Transkript
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06.05.2025
Nr. 4
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Intro to Systems Biology Concepts II: Modelling |
Ralf Zimmer |
Video Teil 1(10.9MB, 0:15h)
Audio Teil 1 (5.9MB)
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Island Model Example:
Video Teil 2 (17.3MB, 0:25h)
Audio Teil 2 (9.8MB)
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Model Classes:
Video Teil 3 (17.3MB, 0:17h)
Audio Teil 3 (9.8MB)
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06.05.2025
Nr. 4 new
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Intro: PetriNet-based Systems Biology |
Ralf Zimmer |
Video (93.8MB, 1:32h)
Audio (56.6MB)
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08.5.2025
Nr. 5
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Intro to Systems Biology Concepts III: *omics |
Ralf Zimmer |
Video Teil 1 (23.3MB, 0:33h)
Audio Teil 1(12.7MB)
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Concepts III: Interdependence:
Video Teil 2 (21.2MB, 0:30h)
Audio Teil 2 (11.5MB)
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Concepts III: Simulators:
Video Teil 3 (18.6MB, 0:27h)
Audio Teil 3 (10.3MB)
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08.5.2025
Nr. 5 new
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Petri nets II |
Ralf Zimmer |
complete slides in the .pdf, sorry for resolution glitch in the video!
Video (85.9MB, 1:34h)
Audio (58.8MB)
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13.5.2025
Nr. 6
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Growth Models: Continous |
Ralf Zimmer |
Video Teil 1 (26.3MB, 0:38h)
Audio Teil 1 (14.6MB)
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Growth Models II: Discrete
Video Teil 2 (57.5MB, 1:04h)
Audio Teil 2 (24.8MB)
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13.5.2025
Nr. 6 new
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Petri nets III |
Ralf Zimmer |
Video (105.5MB, 1:38h)
Audio (62.7MB)
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15.5.2025
Nr. 7
|
ODE primer |
Ralf Zimmer |
Video Teil 1 (44MB, 1:02h)
Audio Teil 1 (24.1MB)
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| Michaelis-Menten Kinetics |
Video Teil 2 (26.5MB, 0:37h)
Audio Teil 2 (14.2MB)
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15.5.2025
Nr. 7 new
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Petri nets IV |
Ralf Zimmer |
Video (121.3MB, 1:44h)
Audio (66.1MB)
Petri nets Applications
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20.5.2025
Nr. 8
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ODE primer 2 |
Ralf Zimmer |
Video Teil 1 (26MB, 0:35h)
Audio Teil 1 (13.8MB)
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| Explicit and Implicit solutions of ODE |
Video Teil 2 (25MB, 0:36h)
Audio Teil 2 (13.6MB)
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22.5.2025
Nr. 9
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ODE primer: Direction fields |
Ralf Zimmer |
Video (50.6MB, 1:09h)
Audio (26.8MB)
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26.5.2025
Nr. 10
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ODE primer 5: Numerical Solutions and Approximations |
Ralf Zimmer |
Video (41.4MB, 0:55h)
Audio (21.7MB)
|
| 29.5.2025 |
Feiertag |
No lecture |
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03.6.2025
Nr. 11
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ODE primer 6: Systems of ODE, n-th order ODE |
Ralf Zimmer |
Video (47,4MB, 1:04h)
Audio (25MB)
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| Some examples of ODE solvers and solutions with matlab |
05.6.2025
Nr. 12
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ODEs?: Scales, Sizes, and Numbers |
Ralf Zimmer |
Video (54,1MB, 1:19h)
Audio (30,8MB)
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| Scales, Sizes, and Numbers II |
Video (46,4MB, 0:54h)
Audio (21MB)
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10.6.2025/Pfingst(-dienstag!)
Nr. 13
|
Reductionist and Systems Thinking, Literature (Part I) |
Ralf Zimmer |
Video (28.2MB, 0:35h)
Audio (13.5MB)
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| Reductionist and Systems Thinking, Literature (Part II) |
Video (51,6MB, 1:07h)
Audio (28.2MB)
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12.6.2025/Pfingst(-ferien!)
Nr. 14
|
ODE Application: The C14-method |
Ralf Zimmer |
Video (24.5MB, 0:32h)
Audio (11.5MB)
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| ODE Application: RNA Half Lifes |
Video (49.8MB, 1:02h)
Audio (22.7MB)
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12.6.2025/Pfingst(-ferien!)
Nr. 15
|
Overview of Literature/Textbooks/Topics I |
Ralf Zimmer |
Video (15.2MB, 0:16h)
Audio (6.4MB)
|
| Overview of Literature/Textbooks/Topics II |
Video (38.4MB, 0:41h)
Audio (16.8MB)
|
| Overview of Literature/Textbooks/Topics III |
Video (13.7MB, 0:16h)
Auadio (6.4MB)
|
| Overview of Literature/Textbooks/Topics IV |
Video (45.6MB, 0:51h)
Audio (20.7MB)
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17.6.2025
Nr. 16
|
Design principles of biological circuits |
Ralf Zimmer |
Video Part I(48.7MB, 1:02h)
Audio (24MB)
|
| NA |
Video Part I(39MB, 0:48h)
Audio (18.8MB)
|
19.6.2025 (Fronleichnam)
Nr. 17
|
Dynamics of simple regulatory motifs |
Ralf Zimmer |
Video (32.3MB, 0:40h)
Audio (15.6MB)
|
24.6.2025
Nr. 18
|
Atherosclerosis |
Ralf Zimmer |
Video (61MB, 1:14h)
Audio (30.3MB)
Paper: Weber&Noels, Cell Systems, 2016, Networks in Coronary Artery Disease
|
| Systems biology of coronary artery disease |
Video (24.4MB, 0:29h)
Audio (11.6MB)
Paper: Talukdar et al, Nature Medicine,11(17), 2011, Atherosclerosis: current pathogenesis and therapeutic options
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26.6.2025
Nr. 19 new
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Nutrition Studies |
Ralf Zimmer |
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02.7.2025
Nr. 20 new
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Nutrition-Hypotheses-2, RNA Medicine |
Ralf Zimmer |
SdW kompakt (2025): Gesund essen |
03.7.2025
Nr. 19
|
CSB Data Resources |
Ralf Zimmer |
Video (61.8MB, 1:08h)
Audio (27.8MB)
|
| Can a Systems Biologist fix a Tamagotchi? |
Video (54.4MB, 1:10h)
Audio (28.6MB)
Paper: Yuri Lazebnik, 2002, Can a Biologist fix a radio
|
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Paper: Luca Cardelli, 200a, Can a Systems Biologist fix a tamagotchi |
8.7.2025
Nr. 20
|
Design principles of biological circuits: FFL(s) |
Ralf Zimmer |
Video (40.6MB, 0:55h)
Audio (21.5MB)
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Design principles of biological circuits: PNFL/PNMA |
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Video (29.5MB, 0:36h)
Audio (13.8MB)
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| 21 |
10.7.2025 |
Ralf Zimmer |
Network Reconstruction |
Video (78.5MB, 1:44h) |
Audio (40.5MB) |
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| 22 |
15.7.2025 |
Ralf Zimmer |
Metabolic Networks |
Video Part I (14.5MB, 0:19h) |
Audio Part I (7.5MB) |
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Video Part II (48.4MB, 1:08h) |
Audio Part II (26.6MB) |
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| 23 |
17.7.2025 |
Ralf Zimmer |
Metabolic Networks: Elementary Flux Modes |
Video (79.8MB, 1:40h) |
Audio (39MB) |
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| 24 |
22.7.2025 |
Ralf Zimmer |
Metabolic Networks: Flux Balance Analysis, Metabolic Control Analysis |
NA |
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Kitano, Robustness |
Video (9.7MB, 0:13h) |
Audio (5.3MB) |
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Kitano, Robustness, Part II |
Video (74.2MB, 1:21h) |
Audio (33.2MB) |
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Kitano, SBML, Celldesigner, Pathway Commons |
Video (63.3MB, 1:03h) |
Audio (25.9MB) |
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| 25 |
24.7.2025 |
Ralf Zimmer |
Network reconstruction: Boolean and Bayesian Networks |
Video (48.7MB, 1:04h) |
Audio (25MB) |
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Stochastic Simulation of Networks, Gillespie SSA |
Video (48.3MB, 1:01h) |
Audio (23.7MB) |
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