Nr No |
Datum Date |
Vortrag Teacher |
Folien Slides |
Skript - Text Mitschnitt Skript - Text capture |
Video - Mitschnitt Video - Capture |
Audio - Mitschnitt Audio - Capture |
Material |
| 1 |
3.11.2020 |
Ralf Zimmer |
Introduction & Organisation (Kickoff WS2020/21, 26.8MB) |
|
Video (120.1MB, 1:30h)
|
Audio (30.3MB) |
- |
| 1' |
3.11.2020 |
Ralf Zimmer |
Introduction & Organisation (SS2020) |
Transkript |
Video (52.1MB, 1:04h)
|
Audio (25.1MB) |
Podcast Virologe Prof .Drosten- |
| 2 |
5.11.2020 |
Ralf Zimmer |
Modeling the Corona Pandemic (SS2020) |
Transkript |
NA |
NA |
-inserm-covid19-report |
| 3 |
10.11.2020 |
Ralf Zimmer |
Intro to Systems Biology Concepts |
Transkript |
NA |
NA |
- |
| 4 |
12.11.2020 |
Ralf Zimmer |
Intro to Systems Biology Concepts II: Modelling |
Transkript, Teil 1-3 |
Video Teil 1(10.9MB, 0:15h) |
Audio Teil 1 (5.9MB) |
|
|
|
|
Island Model Example |
|
Video Teil 2 (17.3MB, 0:25h) |
Audio Teil 2 (9.8MB) |
|
|
|
|
Model Classes |
|
Video Teil 3 (17.3MB, 0:17h) |
Audio Teil 3 (9.8MB) |
|
| 5 |
17.11.2020 |
Ralf Zimmer |
Intro to Systems Biology Concepts III: *omics |
Transkript, Teil 1 |
Video Teil 1 (23.3MB, 0:33h) |
Audio Teil 1(12.7MB) |
|
|
|
|
Concepts III: Interdependence |
Transkript, Teil 2 |
Video Teil 2 (21.2MB, 0:30h) |
Audio Teil 2 (11.5MB) |
|
|
|
|
Concepts III: Simulators |
Transkript, Teil 3 |
Video Teil 3 (18.6MB, 0:27h) |
Audio Teil 3 (10.3MB) |
|
| 6 |
19.11.2020 |
Ralf Zimmer |
Growth Models: Continous |
NA |
Video Teil 1 (26.3MB, 0:38h) |
Audio Teil 1 (14.6MB) |
|
|
|
|
Growth Models II: Discrete |
NA |
Video Teil 2 (57.5MB, 1:04h) |
Audio Teil 2 (24.8MB) |
|
| 7 |
24.11.2020 |
Ralf Zimmer |
ODE primer |
NA |
Video Teil 1 (44MB, 1:02h) |
Audio Teil 1 (24.1MB) |
|
|
|
|
Michaelis-Menten Kinetics |
NA |
Video Teil 2 (26.5MB, 0:37h) |
Audio Teil 2 (14.2MB) |
|
| 8 |
26.11.2020 |
Ralf Zimmer |
ODE primer 2 |
NA |
Video Teil 1 (26MB, 0:35h) |
Audio Teil 1 (13.8MB) |
|
|
|
|
Explicit and Implicit solutions of ODE |
NA |
Video Teil 2 (25MB, 0:36h) |
Audio Teil 2 (13.6MB) |
|
| 9 |
1.12.2020 |
Ralf Zimmer |
ODE primer: Direction fields |
NA |
Video Teil 2 (50.6MB, 1:09h) |
Audio Teil 2 (26.8MB) |
|
| 10 |
3.12.2020 |
Ralf Zimmer |
ODE primer 5: Numerical Solutions and Approximations |
NA |
Video (41.4MB, 0:55h) |
Audio (21.7MB) |
|
| 11 |
8.12.2020 |
Ralf Zimmer |
ODE primer 6: Systems of ODE, n-th order ODE |
NA |
Video (47,4MB, 1:04h) |
Audio (25MB) |
|
| 12 |
10.12.2020 |
Ralf Zimmer |
ODEs?: Scales, Sizes, and Numbers |
NA |
Video (54,1MB, 1:19h) |
Audio (30,8MB) |
|
|
|
|
Scales, Sizes, and Numbers II |
NA |
Video (46,4MB, 0:54h) |
Audio (21MB) |
|
| 13 |
15.12.2020 |
Ralf Zimmer |
Reductionist and Systems Thinking, Literature (Part I) |
NA |
Video (28.2MB, 0:35h) |
Audio (13.5MB) |
|
|
|
|
Reductionist and Systems Thinking, Literature (Part II) |
NA |
Video (51,6MB, 1:07h) |
Audio (28.2MB) |
|
| 14 |
17.12.2020 |
Ralf Zimmer |
ODE Application: The C14-method |
NA |
Video (24.5MB, 0:32h) |
Audio (11.5MB) |
|
|
|
|
ODE Application: RNA Half Lifes |
NA |
Video (49.8MB, 1:02h) |
Audio (22.7MB) |
|
| 15 |
22.12.2020 |
Ralf Zimmer |
Overview of Literature/Textbooks/Topics I |
NA |
Video (15.2MB, 0:16h) |
Audio (6.4MB) |
|
|
|
|
Overview of Literature/Textbooks/Topics II |
NA |
Video (38.4MB, 0:41h) |
Audio (16.8MB) |
|
|
|
|
Overview of Literature/Textbooks/Topics III |
NA |
Video (13.7MB, 0:16h) |
Audio (6.4MB) |
|
|
|
|
Overview of Literature/Textbooks/Topics IV |
NA |
Video (45.6MB, 0:51h) |
Audio (20.7MB) |
|
| 16 |
24.12.2020 |
Ralf Zimmer |
Design principles of biological circuits |
NA |
Video Part I(48.7MB, 1:02h) |
Audio (24MB) |
|
|
|
|
|
NA |
Video Part I(39MB, 0:48h) |
Audio (18.8MB) |
|
| 17 |
6.1.2021 |
Ralf Zimmer |
Dynamics of simple regulatory motifs |
NA |
Video (32.3MB, 0:40h) |
Audio (15.6MB) |
|
| 18 |
12.1.2021 |
Ralf Zimmer |
Atherosclerosis |
NA |
Video (61MB, 1:14h) |
Audio (30.3MB) |
Paper: Weber&Noels, Cell Systems, 2016, Networks in Coronary Artery Disease |
|
|
|
Systems biology of coronary artery disease |
NA |
Video (24.4MB, 0:29h) |
Audio (11.6MB) |
Paper: Talukdar et al, Nature Medicine,11(17), 2011, Atherosclerosis: current pathogenesis and therapeutic options |
| 19 |
14.1.2021 |
Ralf Zimmer |
CSB Data Resources |
NA |
Video (61.8MB, 1:08h) |
Audio (27.8MB) |
|
|
|
|
Can a Systems Biologist fix a Tamagotchi? |
NA |
Video (54.4MB, 1:10h) |
Audio (28.6MB) |
Paper: Yuri Lazebnik, 2002, Can a Biologist fix a radio |
|
|
|
|
|
|
|
Paper: Luca Cardelli, 200a, Can a Systems Biologist fix a tamagotchi |
| 20 |
19.1.2021 |
Ralf Zimmer |
Design principles of biological circuits: FFL(s) |
NA |
Video (40.6MB, 0:55h) |
Audio (21.5MB) |
|
|
|
|
Design principles of biological circuits: PNFL/PNMA |
NA |
Video (29.5MB, 0:36h) |
Audio (13.8MB) |
|
| 21 |
21.1.2021 |
Ralf Zimmer |
Network Reconstruction |
NA |
Video (78.5MB, 1:44h) |
Audio (40.5MB) |
|
| 22 |
26.1.2021 |
Ralf Zimmer |
Metabolic Networks |
NA |
Video Part I (14.5MB, 0:19h) |
Audio Part I (7.5MB) |
|
|
|
|
|
NA |
Video Part II (48.4MB, 1:08h) |
Audio Part II (26.6MB) |
|
| 23 |
28.1.2020 |
Ralf Zimmer |
Metabolic Networks: Elementary Flux Modes |
NA |
Video (79.8MB, 1:40h) |
Audio (39MB) |
|
| 24 |
2.2.2021 |
Ralf Zimmer |
Metabolic Networks: Flux Balance Analysis, Metabolic Control Analysis |
NA |
|
|
|
|
|
|
Kitano, Robustness |
NA |
Video (9.7MB, 0:13h) |
Audio (5.3MB) |
|
|
|
|
Kitano, Robustness, Part II |
NA |
Video (74.2MB, 1:21h) |
Audio (33.2MB) |
|
|
|
|
Kitano, SBML, Celldesigner, Pathway Commons |
NA |
Video (63.3MB, 1:03h) |
Audio (25.9MB) |
|
| 25 |
4.2.2021 |
Ralf Zimmer |
Network reconstruction: Boolean and Bayesian Networks |
NA |
Video (48.7MB, 1:04h) |
Audio (25MB) |
|
|
|
|
Stochastic Simulation of Networks, Gillespie SSA |
NA |
Video (48.3MB, 1:01h) |
Audio (23.7MB) |
|
| 26 |
9.2.2021 |
Ralf Zimmer |
Petri Nets I |
NA |
|
|
|
| 27 |
|
|
Petri Nets II |
NA |
|
|
|
| 28 |
|
Ralf Zimmer |
Petri Nets III |
NA |
|
|
|
| 29 |
|
|
Petri Nets IV |
NA |
|
|
|
| 30 |
11.2.2021 |
Ralf Zimmer |
Spatial modeling, Cellular automata |
NA |
|
|
|
| 31 |
|
|
Spatial modeling, Cellular automata II |
NA |
|
|
|
| 32 |
|
Ralf Zimmer |
Evolution-Development Models (Evo-Devo) |
NA |
|
|
|
