2023
Papers
Elena Weiß, Thomas Hennig, Pilar Graßl, Lara Djakovic, Adam W. Whisnant, Christopher S. Jürges, Franziska Koller,
Michael Kluge,
Florian Erhard, Lars Dölken,
Caroline C. Friedel,
HSV-1 Infection Induces a Downstream Shift of Promoter-Proximal Pausing for Host Genes, Journal of Virology, vol. 0, no. 0, pp. e00381-23, 2023.
Lara Djakovic, Thomas Hennig, Katharina Reinisch, Andrea Milic, Adam W. Whisnant, Katharina Wolf,
Elena Weiß, Tobias Haas, Arnhild Grothey, Christopher S. Jürges,
Michael Kluge, Elmar Wolf,
Florian Erhard,
Caroline C. Friedel, Lars Dölken,
The HSV-1 ICP22 protein selectively impairs histone repositioning upon Pol II transcription downstream of genes., Nature communications, vol. 14, pp. 4591, 2023.
2022
Papers
Marie-Sophie Friedl, Lara Djakovic,
Michael Kluge, Thomas Hennig, Adam W. Whisnant, Simone Backes, Lars Dölken,
Caroline C. Friedel,
HSV-1 and influenza infection induce linear and circular splicing of the long NEAT1 isoform., PloS one, vol. 17, pp. e0276467, 2022.
Milan Hluchý, Pavla Gajdušková, Igor Ruiz de los Mozos, Michal Rájecký,
Michael Kluge, Benedict-Tilman Berger, Zuzana Slabá, David Potěšil,
Elena Weiß, Jernej Ule, Zbyněk Zdráhal, Stefan Knapp, Kamil Paruch,
Caroline C. Friedel, Dalibor Blazek,
CDK11 regulates pre-mRNA splicing by phosphorylation of SF3B1, Nature, vol. 609, no. 7928, pp. 829-834, 2022.
2021
Papers
Daniel F. R. Boehmer, Simone Formisano, Carina C. de Oliveira Mann, Stephan A. Mueller,
Michael Kluge, Philipp Metzger, Meino Rohlfs, Christine Hörth, Lorenz Kocheise, Stefan F. Lichtenthaler, Karl-Peter Hopfner, Stefan Endres, Simon Rothenfusser,
Caroline C. Friedel, Peter Duewell, Max Schnurr, Lars M. Koenig,
OAS1/RNase L executes RIG-I ligand–dependent tumor cell apoptosis, Science Immunology, Science Immunology, vol. 6, no. 61, 2021.
Caroline C. Friedel, Adam W. Whisnant, Lara Djakovic, Andrzej J. Rutkowski,
Marie-Sophie Friedl,
Michael Kluge, James C. Williamson, Somesh Sai, Ramon Oliveira Vidal, Sascha Sauer, Thomas Hennig, Arnhild Grothey, Andrea Milić, Bhupesh K. Prusty, Paul J. Lehner, Nicholas J. Matheson,
Florian Erhard, Lars Dölken,
Dissecting Herpes Simplex Virus 1-Induced Host Shutoff at the RNA Level, Journal of Virology, American Society for Microbiology Journals, vol. 95, no. 3, 2021.
Yong Huang, Rut Tejero, Vivian K. Lee, Concetta Brusco, Theodore Hannah, Taylor B. Bertucci, Chrystian Junqueira Alves, Igor Katsyv,
Michael Kluge, Ramsey Foty, Bin Zhang,
Caroline C. Friedel, Guohao Dai, Hongyan Zou, Roland H. Friedel,
Plexin-B2 facilitates glioblastoma infiltration by modulating cell biomechanics, Communications Biology, Springer Science and Business Media LLC, vol. 4, no. 1, 2021.
Shalaka Wahane, Xianxiao Zhou, Xiang Zhou, Lei Guo,
Marie-Sophie Friedl,
Michael Kluge, Aarthi Ramakrishnan, Li Shen,
Caroline C. Friedel, Bin Zhang, Roland H. Friedel, Hongyan Zou,
Diversified transcriptional responses of myeloid and glial cells in spinal cord injury shaped by HDAC3 activity., Science advances, vol. 7, 2021.
2020
Papers
Michael Kluge,
Marie-Sophie Friedl, Amrei L Menzel,
Caroline C. Friedel,
Watchdog 2.0: New developments for reusability, reproducibility, and workflow execution, GigaScience, vol. 9, no. 6, 2020.
Xiang and Wahane Shalaka and Friedl Marie-Sophie and Kluge Michael and Friedel Caroline C. and Avrampou Kleopatra and Zachariou Venetia and Guo Lei and Zhang Bin and He Xijing and Friedel Roland H. and Zou Hongyan Zhou,
Microglia and macrophages promote corralling, wound compaction and recovery after spinal cord injury via Plexin-B2, Nature Neuroscience, vol. 23, no. 3, pp. 337-350, 2020.
2019
Papers
Anil Paul Chirackal Manavalan, Kveta Pilarova,
Michael Kluge, Koen Bartholomeeusen, Michal Rajecky, Jan Oppelt, Prashant Khirsariya, Kamil Paruch, Lumir Krejci,
Caroline C. Friedel, Dalibor Blazek,
CDK12 controls G1/S progression by regulating RNAPII processivity at core DNA replication genes, EMBO reports, pp. e47592, 2019.
Philipp Metzger, Sabrina V. Kirchleitner,
Michael Kluge, Lars M. Koenig, Christine Hörth, Carlotta A. Rambuscheck, Daniel Böhmer, Julia Ahlfeld, Sebastian Kobold,
Caroline C. Friedel, Stefan Endres, Max Schnurr, Peter Duewell,
Immunostimulatory RNA leads to functional reprogramming of myeloid-derived suppressor cells in pancreatic cancer, Journal for ImmunoTherapy of Cancer, vol. 7, no. 1, pp. 288, 2019.
Michaela Rohrmoser,
Michael Kluge, Yousra Yahia, Anita Gruber-Eber, Muhammad Ahmad Maqbool, Ignasi Forné, Stefan Krebs, Helmut Blum, Ann Katrin Greifenberg, Matthias Geyer, Nicolas Descostes, Axel Imhof, Jean-Christophe Andrau,
Caroline C. Friedel, Dirk Eick,
MIR sequences recruit zinc finger protein ZNF768 to expressed genes, Nucleic Acids Research, vol. 47, no. 2, pp. 700-715, 2019.
Rut Tejero, Yong Huang, Igor Katsyv,
Michael Kluge, Jung-Yi Lin, Jessica Tome-Garcia, Nicolas Daviaud, Yuanshuo Wang, Bin Zhang, Nadejda M Tsankova,
Caroline C. Friedel, Hongyan Zou, Roland H Friedel,
Gene signatures of quiescent glioblastoma cells reveal mesenchymal shift and interactions with niche microenvironment, EBioMedicine, vol. 42, pp. 252-269, 2019.
2018
Papers
Michael and Friedel Caroline C. Kluge,
Watchdog - a workflow management system for the distributed analysis of large-scale experimental data, BMC Bioinformatics, vol. 19, no. 97, 2018.
2017
Papers
Tim-Michael Decker,
Michael Kluge, Stefan Krebs, Nilay Shah, Helmut Blum,
Caroline C. Friedel, Dirk Eick,
Transcriptome analysis of dominant-negative Brd4 mutants identifies Brd4-specific target genes of small molecule inhibitor JQ1, Scientific Reports, 2017.
Maximilian Hastreiter, Tim Jeske, Jonathan Hoser,
Michael Kluge, Kaarin Ahomaa,
Marie-Sophie Friedl, Sebastian J. Kopetzky, Jan-Dominik Quell, H.-Werner Mewes,
Robert Küffner,
KNIME4NGS: a comprehensive toolbox for next generation sequencing analysis, Bioinformatics, vol. 33, no. 10, pp. 1565-1567, 2017.
2014
Papers
Tatyana Goldberg, Maximilian Hecht, Tobias Hamp, Timothy Karl, Guy Yachdav, Nadeem Ahmed, Uwe Altermann, Philipp Angerer, Sonja Ansorge, Kinga Balasz, Michael Bernhofer, Alexander Betz, Laura Cizmadija, Kieu Trinh Do, Julia Gerke, Robert Greil, Vadim Joerdens, Maximilian Hastreiter, Katharina Hembach, Max Herzog, Maria Kalemanov,
Michael Kluge, Alice Meier, Hassan Nasir, Ulrich Neumaier, Verena Prade, Jonas Reeb, Aleksandr Sorokoumov, Ilira Troshani, Susann Vorberg, Sonja Waldraff, Jonas Zierer, Henrik Nielsen, Burkhard Rost,
LocTree3 prediction of localization., Nucleic acids research, vol. 42, pp. W350-5, 2014.
2011
Theses
Michael Kluge,
miRNA regulation mechanisms of Herpes viruses, Bachelor Thesis, LFE Bioinformatik, LMU München, 2011.
