2024
Papers
Moritz Mühlhofer, Felix Offensperger, Sarah Reschke, Georg Wallmann,
Gergely Csaba,
Evi Berchtold, Maximilian Riedl, Helmut Blum, Martin Haslbeck,
Ralf Zimmer, Johannes Buchner,
Deletion of the transcription factors Hsf1, Msn2 and Msn4 in yeast uncovers transcriptional reprogramming in response to proteotoxic stress, FEBS Letters, vol. 598, no. 6, pp. 635-657, 2024.
2019
Papers
Constantin Ammar,
Evi Berchtold,
Gergely Csaba, Andreas Schmidt, Axel Imhof,
Ralf Zimmer,
Multi-Reference Spectral Library Yields Almost Complete Coverage of Heterogeneous LC-MS/MS Data Sets, Journal of Proteome Research, vol. 18, no. 4, pp. 1553-1566, 2019.
Evi Berchtold, Martina Vetter, Melanie Gündert,
Gergely Csaba, Christine Fathke, Susanne E Ulbrich, Christoph Thomssen,
Ralf Zimmer, Eva J Kantelhardt,
Comparison of six breast cancer classifiers using qPCR, Bioinformatics, 2019.
Evi Berchtold,
Gergely Csaba,
Ralf Zimmer,
YESdb: integrative analysis of environmental stress in yeast, Database, vol. 2019, 2019.
Moritz Mühlhofer,
Evi Berchtold, Christopher G Stratil,
Gergely Csaba, Elena Kunold, Nina C. Bach, Stephan A. Sieber, Martin Haslbeck,
Ralf Zimmer, Johannes Buchner,
The Heat Shock Response in Yeast Maintains Protein Homeostasis by Chaperoning and Replenishing Proteins, Cell Reports, vol. 29, no. 13, pp. 4593-4607, 2019.
2018
Theses
Evi Berchtold,
Methods for explaining biological systems and high-throughput data., PhD Thesis, LMU München, 2018.
2017
Papers
Evi Berchtold,
Gergely Csaba,
Ralf Zimmer,
RelExplain—integrating data and networks to explain biological processes, Bioinformatics, vol. 33, no. 12, pp. 1837-1844, 2017.
2016
Papers
Evi Berchtold,
Gergely Csaba,
Ralf Zimmer,
Evaluating Transcription Factor Activity Changes by Scoring Unexplained Target Genes in Expression Data, PLoS ONE, vol. 11, no. 10, 2016.
2012
Papers
Tobias Petri,
Evi Berchtold,
Ralf Zimmer,
Caroline C. Friedel,
Detection and correction of probe-level artefacts on microarrays, BMC Bioinformatics, vol. 13, pp. 114, 2012.
Theses
Evi Berchtold,
RELEXplain - Relation Networks Explaining Biological Processes, Master Thesis, LFE Bioinformatik / LMU München, 2012.
2011
Papers
Dintner Sebastian, Anna Staroń,
Evi Berchtold,
Tobias Petri, Thorsten Mascher, Susanne Gebhard,
Co-evolution of ABC-transporters and two-component regulatory systems as resistance modules against antimicrobial peptides in Firmicutes bacteria, Journal of Bacteriology, vol. 193, no. 15, pp. 3851–3862, 2011.
2010
Theses
Evi Berchtold,
Quality Check and Differential Expression Using Newly Synthesized RNA, Bachelor Thesis, LFE Bioinformatik, LMU München, 2010.
