| Wednesday, September 7 | |
|---|---|
| 08:00- | Registration |
| 08:30-08:40 | Opening GCB Junior Conference |
| 08:40-09:00 | J. Patrick Pett, Daniel H. Mehnert, Jonas Ibn-Salem, Ole Eigenbrod, Raik Otto, Stephan Knorr, Stina-Stephanie M. Richter and Roland Krause Identification of shared components of protein complexes |
| 09:00-09:20 | Eva Vennmann, Nadine Schneider and Matthias Rarey Discrimination of permanent and transient heterodimers: The real challenge in the classification of protein-protein interactions |
| 09:20-09:40 | Florian Erhard and Ralf Zimmer Detecting outlier peptides in quantitative High-Troughput mass spectrometry |
| 09:40-10:00 | Thomas Hoffmann and Iris Antes Modeling the variable regions of T-Cell Receptors |
| 10:00-10:20 | Manuel Andreas Glaser and Iris Antes Docking Peptides into MHC Class II Complexes |
| 10:20-10:50 | Coffee Break |
| 10:50-11:10 | Sebastian Dümcke, Martin Seizl, Nicole Pirkl, Steffanie Etzold, Dietmar Martin and Achim Tresch One Hand Clapping: Detection of condition-specic Transcription Factor Interactions from genome-wide gene activity Data |
| 11:10-11:30 | Matthias Böck, Constanze Schmitt and Stefan Kramer A Study of Dynamic Time Warping for the Inference of Gene Regulatory Relationships |
| 11:30-11:50 | Robert Pesch and Ralf Zimmer To transfer or not to transfer - Complementing the eukaryotic protein-protein interactome |
| 11:50-12:10 | Lukas Windhager, Jonas Zierer and Ralf Zimmer Module Extraction from Ensembles of Networks |
| 12:10-12:30 | Alena Mysickova and Martin Vingron Detection of interacting transcription factors in human tissues using predicted DNA binding affinity |
| 12:30-13:30 | Lunch |
| 13:30-13:50 | Huy Dinh, Ortrun Mittelsten Scheid and Arndt Von Haeseler MethColor: a computational approach to uncover DNA methylation heterogeneity |
| 13:50-14:10 | Haroon Naeem, Ralf Zimmer and Robert Küffner Rigorous assessment of gene set enrichment tests |
| 14:10-14:30 | Sabine Hug, Daniel Schmidl, Wei Bo Li, Matthias Greiter and Fabian J. Theis Bayesian Model Selection for Zirconium Processing in the Human Body after Ingestion |
| 14:30-15:50 | Michael Schwarzfischer, Carsten Marr, Jan Krumsiek, Philipp S. Hoppe, Adam Filipczyk, Timm Schroeder and Fabian J. Theis Automated cell quantication allows inference of protein half-life from single cell time-lapse microscopy |
| 14:50-15:10 | Martin Preusse, Andreas Kowarsch, Carsten Marr and Fabian J. Theis miTALOS: Analyzing the tissue-specific regulation of signaling pathways by human and mouse microRNAs |
| 15:10-15:30 | Andre Dau and Johannes Krugel tt-analyze and tt-generate: Tools to Analyze and Generate Sequences with Trained Statistical Properties |
| 15:30-16:00 | Coffee Break |
| 16:00- | Welcome Address Opening Event GCB 2011: 10 Years Bioinformatics Munich (BIM) Opening Lecture: Pavel Pevzner (UC San Diego): De Novo Sequencing of Antibiotics: Metabolomics Meets Graph Theory |
| 19:00- | Welcome Reception |
| Thursday, September 8 | |
| 08:30-09:15 | Matthias Mann (MPI Biochemistry, Martinsried) Systems wide analysis of the proteome by quantitative mass spectrometry (Invited Talk) |
| 09:15-09:40 | Florian Rasche, Ales Svatos, Ravi Kumar Maddula, Christoph Böttcher and Sebastian Böcker [HT] Fragmentation trees from mass spectra: a step towards metabolite identification |
| 09:40-10:05 | Orland Gonzalez, Georg Malterer, Ralf Zimmer and Jürgen Haas Guilt by Association in Human RNAi Screens |
| 10:05-10:30 | Coffee Break |
| 10:30-10:55 | Ludwig Geistlinger [HT] From Sets To Graphs: Towards a Realistic Enrichment Analysis of Transcriptomic Systems |
| 10:55-11:20 | Ralf Eggeling, Jens Keilwagen and Ivo Grosse Recognition of splice sites and transcription factor binding sites using generalized maximum entropy models |
| 11:20-11:45 | Jens Keilwagen, Jan Grau, Ivan A. Paponov, Stefan Posch, Marc Strickert and Ivo Grosse [HT] De-Novo Discovery of Differentially Abundant DNA Binding Sites Including Their Positional Preference |
| 11:45-12:45 | Lunch |
| 12:45-13:30 | Thomas Illig (Helmholtz Centre Munich) Metabolomics - a new avenue to personalized medicine? (Invited Talk) |
| 13:30-13:55 | Martin Macguill, Tobias Petri and Ralf Zimmer On Risk Stratification Strategies in Intensive Care Medicine |
| 13:55-14:20 | Marco Mernberger and Eyke Huellermeier Prediction of Protein Localization for Specialized Compartments using Time Series Kernels |
| 14:20-14:50 | Coffee Break |
| 14:50-15:15 | Mathias Möhl, Christina Schmiedl and Shay Zakov Sparsification in Algebraic Dynamic Programming |
| 15:15-15:40 | Anna Katharina Dehof, Hans-Peter Lenhof and Andreas Hildebrandt Predicting Protein NMR Chemical Shifts in the Presence of Ligands and Ions using Force Field-based Features |
| 15:40-16:25 | Dan Rujescu (LMU, Munich) Genomics of schizophrenia and intermediate phenotypes (Invited Talk) |
| 16:30-18:30 | Poster Session |
| 19:00- | Conference Dinner |
| Friday, September 9 | |
| 08:30-09:15 | Thomas Werner (Genomatix, Munich) Integrating NGS data into functional genomics requires new solutions in bioinformatics (Invited Talk) |
| 09:15-09:40 | Matthias Heinig, Enrico Petretto, Chris Wallace, Anja Bauerfeind, Stefan Blankenberg, Martin Vingron, Norbert Hubner and Stuart Cook [HT] A conserved trans-acting regulatory locus underlies an inflammatory gene network and susceptibility to autoimmune type 1 diabetes |
| 09:40-10:05 | Caroline C. Friedel, Lars Dölken and Ralf Zimmer [HT] High resolution profiling of RNA synthesis and decay |
| 10:05-10:30 | Coffee Break |
| 10:30-10:55 | Sergio Grimbs, Anne Arnold, Aneta Koseska, Jürgen Kurths, Joachim Selbig and Zoran Nikoloski [HT] Spatiotemporal dynamics of the Calvin cycle: Multistationarity and symmetry breaking instabilities |
| 10:55-11:20 | Jan Krumsiek, Karsten Suhre, Thomas Illig, Jerzy Adamski and Fabian J. Theis [HT] Gaussian graphical modeling reconstructs pathway reactions from high-throughput metabolomics data |
| 11:20-11:45 | Sebastian Klie [HT] Metabolomic and transcriptomic stress response of Escherichia coli |
| 11:45-12:30 | Eberhard Voit (Georgia Tech) Computational Systems Biology: From Simple Models to System Simulation and the Discovery of Design Principles (Invited Talk) |
| 12:30-13:30 | Lunch |
| 13:30-14:15 | Andrei Lupas (U Tübingen) Prokaryotic ancestry of innate immunity and apoptosis (Invited Talk) |
| 14:15-14:40 | Christian Schudoma, Abdelhalim Larhlimi and Dirk Walther [HT] The influence of the local sequence environment on RNA loop structures |
| 14:40-15:05 | Jiabin Huang and Björn Voß RNAHeliCes - Folding space analysis based on position aware structure abstraction |
| 15:05-15:30 | Coffee Break |
| 15:30-15:55 | Fernando Meyer, Stefan Kurtz, Rolf Backofen, Sebastian Will and Michael Beckstette [HT] Structator: fast index-based search for RNA sequence-structure patterns |
| 15:55-16:20 | Andreas S. Richter and Rolf Backofen Accessibility and conservation in bacterial small RNA-mRNA interactions and implications for genome-wide target predictions |
| 16:20-16:45 | Ewan Birney (EBI, Cambridge) Encode: understanding our genome (Invited Talk) |
| 16:45- | Closing |